AT3G55960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.989 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2169 Blast hits to 2162 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 723; Fungi - 425; Plants - 384; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:20760797..20762892 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 34515.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.94 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 305 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAELTQADVV YSPRSFQVWK TLVNWLAFFY QIFLQILRAV GYHPLLSSSA KASADGFKPL PAIELLDRAS ESPTTVEIAA TTTSDSCSDG ARSRFQRLKV 101: VLDLDETLVC AYETSSLPAA LRNQAIEAGL KWFELECLST DKEYDGKPKI NYVTVFERPG LHEFLEQLSE FADLILFTAG LEGYARPLVD RIDTRKVLTN 201: RLYRPSTVST QYRDHVKDLL STSKNMCRTV IVDNNPFSFL LQPSNGIPCI AFSAGQPNDT QLLDVILPLL KQLSEEDDVR PTLYDRFRMP EWFEKQGIPP 301: SCWKP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)