AT3G55950.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.983 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CRINKLY4 related 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CRINKLY4 related 3 (CCR3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 4 (TAIR:AT5G47850.1); Has 117697 Blast hits to 115463 proteins in 4296 species: Archae - 105; Bacteria - 13273; Metazoa - 42642; Fungi - 9844; Plants - 33569; Viruses - 607; Other Eukaryotes - 17657 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:20753903..20756347 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 87686.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 814 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKRFINSTVT FSVTVTIAVI IFFLLSPVTS LGSGSTYAVV YGSDTVCALI SGQPTQRILC YDTRLNINVT LNPGVSFSSI AAGDNFLCGI RSGGYSLLCW 101: DNIGSYSPNR KRIYQNDNVL LETLSVGDKQ ICATVNGTNS LKCWRGSVSD QSKPPNERFR SISSGVGFSC GVSIRNNRIL CWGTDPVKSN QIQTGFGNTP 201: MVTISAGKSH ACGLNTTGNL ICIGNNDSGQ LNVIAPDQPN LYSSSLSLGS NFTCAMRISN NSVVCWGGGA ERFNNVTDSI SFESISSGPG LICGLISSNL 301: SIMCWNPTNF SRIFLPFPEV LPGPCVESSS SSLCSCGVYP QSDKLCSGTG SICKSCPIQF PASPPSQFPL PPPPPPPPPS PSTSSPPSKA LTRGLLAFAI 401: VGSVGAFAGI CSVVYCLWTG VCLGKKKVHN SVQPTITRGG SNSRSNSSNS RSLSIRRQGS RMLSMRRQRS GTSSMKHADK AEEFSFSELA SATGNFSLEN 501: KIGSGSFGVV YRGKLNDGRE VAIKRGEVNA KMKKFQEKET AFDSEIAFLS RLHHKHLVRL VGYCEEREEK LLVYDYMKNG ALYDHLHDKN NVEKHSSLIN 601: SWKMRIKIAL DAARGIEYLH NYAVPPIIHR DIKSSNILLD SNWVARVSDF GLSLMGPVLG KDHNPYQRPT KAAGTVGYID PEYYSLNVLT DKSDVYGLGV 701: VLLELLTGKR AIFRNNGDVE EEEGCVPVHL VDYSVPAITA DELSTILDPR VGSPELGEGD AVELVAYTAM HCVNAEGRNR PTMTDIVGNL ERALDLCGDS 801: HGSISSGICS IVSD |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)