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AT5G01830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 17 (TAIR:AT1G29340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410ITMQeggNOG:ENOG410XQT6EMBL:AK229397
EMBL:AL162351EMBL:BT015367EMBL:BT015725EMBL:CP002688
EnsemblPlants:AT5G01830EnsemblPlants:AT5G01830.1entrez:831850Gene3D:1.25.10.10
Gene3D:3.30.40.10GeneID:831850Genevisible:Q9LZW3GO:GO:0004842
GO:GO:0010200GO:GO:0016874Gramene:AT5G01830.1hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF63HOGENOM:HOG000238412InParanoid:Q9LZW3InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024
KEGG:ath:AT5G01830ncoils:CoilOMA:RESIFRWPaxDb:Q9LZW3
Pfam:PF00514Pfam:PF04564Pfam:Q9LZW3Pfscan:PS50176
Pfscan:PS51698PhylomeDB:Q9LZW3PIR:T48204PRIDE:Q9LZW3
PRO:PR:Q9LZW3PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q9LZW3
Proteomes:UP000006548RefSeq:NP_195803.1SMART:SM00185SMART:SM00504
SMR:Q9LZW3STRING:3702.AT5G01830.1SUPFAM:SSF48371SUPFAM:SSF57850
TAIR:AT5G01830UniGene:At.33496UniPathway:UPA00143UniProt:Q9LZW3
Coordinates (TAIR10) chr5:+:320983..323007
Molecular Weight (calculated) 73604.20 Da
IEP (calculated) 7.23
GRAVY (calculated) 0.06
Length 674 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)