AT1G62200.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.646 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8090 Blast hits to 7669 proteins in 1476 species: Archae - 0; Bacteria - 3978; Metazoa - 789; Fungi - 491; Plants - 2227; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:22982147..22984334 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 65499.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 590 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVNSNEEDER RILDVEESLL TQEEVNNHLT GLSSTAEDGS IDIYGNPPSK KKTGNWKACP FILGNECCER LAYYGIAKNL ITYYTSELHE SNVSAASDVM 101: IWQGTCYITP LIGAVIADSY WGRYWTIASF SAIYFIGMAL LTLSASLPVL KPAACAGVAA ALCSPATTVQ YAVFFTGLYL IALGTGGIKP CVSSFGADQF 201: DDTDPRERVR KASFFNWFYF SINIGSFISS TLLVWVQENV GWGLGFLIPT VFMGVSIASF FIGTPLYRFQ KPGGSPITRV CQVLVAAYRK LKLNLPEDIS 301: FLYETREKNS MIAGSRKIQH TDGYKFLDKA AVISEYESKS GAFSNPWKLC TVTQVEEVKT LIRMFPIWAS GIVYSVLYSQ ISTLFVQQGR SMNRIIRSFE 401: IPPASFGVFD TLIVLISIPI YDRFLVPFVR RFTGIPKGLT DLQRMGIGLF LSVLSIAAAA IVETVRLQLA QDFVAMSIFW QIPQYILMGI AEVFFFIGRV 501: EFFYDESPDA MRSVCSALAL LNTAVGSYLS SLILTLVAYF TALGGKDGWV PDDLNKGHLD YFFWLLVSLG LVNIPVYALI CVKHTKKKAL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)