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AT1G62200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.646
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8090 Blast hits to 7669 proteins in 1476 species: Archae - 0; Bacteria - 3978; Metazoa - 789; Fungi - 491; Plants - 2227; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
Protein Annotations
BioGrid:27737BRENDA:3.6.3.43eggNOG:COG3104eggNOG:KOG1237
EMBL:AC000375EMBL:AY058836EMBL:CP002684EnsemblPlants:AT1G62200
EnsemblPlants:AT1G62200.1entrez:842516GeneID:842516Genevisible:Q93Z20
GO:GO:0005215GO:GO:0006857GO:GO:0009705GO:GO:0016021
Gramene:AT1G62200.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF105HOGENOM:HOG000237400
InParanoid:Q93Z20InterPro:IPR000109InterPro:IPR018456InterPro:IPR020846
KEGG:ath:AT1G62200OMA:ATIDYEVPANTHER:PTHR11654PaxDb:Q93Z20
Pfam:PF00854Pfam:Q93Z20PhylomeDB:Q93Z20PIR:E96648
PRIDE:Q93Z20PRO:PR:Q93Z20PROSITE:PS01022PROSITE:PS01023
ProteinModelPortal:Q93Z20Proteomes:UP000006548RefSeq:NP_176411.2scanprosite:PS01022
scanprosite:PS01023SMR:Q93Z20STRING:3702.AT1G62200.1SUPFAM:SSF103473
TAIR:AT1G62200TMHMM:TMhelixUniGene:At.10251UniProt:Q93Z20
Coordinates (TAIR10) chr1:-:22982147..22984334
Molecular Weight (calculated) 65499.60 Da
IEP (calculated) 6.96
GRAVY (calculated) 0.35
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNSNEEDER RILDVEESLL TQEEVNNHLT GLSSTAEDGS IDIYGNPPSK KKTGNWKACP FILGNECCER LAYYGIAKNL ITYYTSELHE SNVSAASDVM
101: IWQGTCYITP LIGAVIADSY WGRYWTIASF SAIYFIGMAL LTLSASLPVL KPAACAGVAA ALCSPATTVQ YAVFFTGLYL IALGTGGIKP CVSSFGADQF
201: DDTDPRERVR KASFFNWFYF SINIGSFISS TLLVWVQENV GWGLGFLIPT VFMGVSIASF FIGTPLYRFQ KPGGSPITRV CQVLVAAYRK LKLNLPEDIS
301: FLYETREKNS MIAGSRKIQH TDGYKFLDKA AVISEYESKS GAFSNPWKLC TVTQVEEVKT LIRMFPIWAS GIVYSVLYSQ ISTLFVQQGR SMNRIIRSFE
401: IPPASFGVFD TLIVLISIPI YDRFLVPFVR RFTGIPKGLT DLQRMGIGLF LSVLSIAAAA IVETVRLQLA QDFVAMSIFW QIPQYILMGI AEVFFFIGRV
501: EFFYDESPDA MRSVCSALAL LNTAVGSYLS SLILTLVAYF TALGGKDGWV PDDLNKGHLD YFFWLLVSLG LVNIPVYALI CVKHTKKKAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)