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AT1G36050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Endoplasmic reticulum vesicle transporter protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G22200.1); Has 1210 Blast hits to 1080 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 262; Plants - 277; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP7XeggNOG:KOG2667EMBL:CP002684EnsemblPlants:AT1G36050
EnsemblPlants:AT1G36050.1entrez:840509ExpressionAtlas:F4I1K2GeneID:840509
GO:GO:0005774GO:GO:0005783GO:GO:0005794GO:GO:0016021
Gramene:AT1G36050.1hmmpanther:PTHR10984hmmpanther:PTHR10984:SF25InParanoid:F4I1K2
InterPro:IPR012936iPTMnet:F4I1K2OMA:IFPHMPCPaxDb:F4I1K2
Pfam:PF07970Pfam:PF13850PRIDE:F4I1K2ProteinModelPortal:F4I1K2
Proteomes:UP000006548RefSeq:NP_564467.5SMR:F4I1K2STRING:3702.AT1G36050.1
TAIR:AT1G36050TMHMM:TMhelixUniGene:At.28182UniGene:At.48126
UniProt:F4I1K2
Coordinates (TAIR10) chr1:+:13450467..13453683
Molecular Weight (calculated) 55484.60 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.16
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGILNKLRN LDAYPKINED FYSRTLSGGV ITLLSSVVMF LLFFSELRLY LHTVTETKLI VDTSRGETLR INFDITFPAL ACSILSVDAM DISGELHLDV
101: KHDIIKRRLD SNGNTIEARQ DGIGATKIEN PLQKHGGRLG HNETYCGSCY GAEAEEHDCC NSCEDVREAY RKKGWGVTNP DLIDQCKREG FLQRVKDEEG
201: EGCNIYGFLE VNKVAGNFHF APGKSFHQSG VHVHDLLAFQ KDSFNISHKI NRLTYGDYFP GVVNPLDKVE WSQDTPNAMY QYFIKVVPTV YTDIRGHTIQ
301: SNQFSVTEHV KSSEAGQLQS LPGVFFFYDL SPIKVTFTEE HISFLHFLTN VCAIVGGVFT VSGIIDAFIY HGQKAIKKKM EIVYGFNEWK KKKQNSLHNK
401: RLEYRESLLV LTRKLLLVNI LIPIAIYVRS RLILGFEELN QNLSEISVWV CFGSSRTFDW VLSSYIFGIG SKRIIPDKLT GTRIYLKPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)