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AT4G15620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G15630.1); Has 622 Blast hits to 622 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 622; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12533eggNOG:ENOG410J0AWeggNOG:ENOG410YQ35EMBL:AL161542
EMBL:BT002974EMBL:BT004455EMBL:CP002687EMBL:Z97339
EnsemblPlants:AT4G15620EnsemblPlants:AT4G15620.1entrez:827239GeneID:827239
Genevisible:O23413GO:GO:0005829GO:GO:0005886GO:GO:0016021
GO:GO:0016226GO:GO:0051536Gramene:AT4G15620.1hmmpanther:PTHR11615
hmmpanther:PTHR11615:SF150HOGENOM:HOG000082766InParanoid:O23413InterPro:IPR006459
InterPro:IPR006702KEGG:ath:AT4G15620OMA:MNGMEMEPaxDb:O23413
Pfam:O23413Pfam:PF04535PhylomeDB:O23413PIR:B71421
PRIDE:O23413PRO:PR:O23413ProteinModelPortal:O23413Proteomes:UP000006548
RefSeq:NP_193297.1TAIR:AT4G15620TIGRfam:TIGR01569TIGRFAMs:TIGR01569
TMHMM:TMhelixUniGene:At.33162UniProt:O23413
Coordinates (TAIR10) chr4:+:8913935..8915531
Molecular Weight (calculated) 20314.00 Da
IEP (calculated) 10.69
GRAVY (calculated) 0.66
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHEGKNNMN GMEMEKGKRE LGSRKGVELT MRVLALILTM AAATVLGVAK QTKVVSIKLI PTLPPLDITT TAKASYLSAF VYNISVNAIA CGYTAISIAI
101: LMISRGRRSK KLLMVVLLGD LVMVALLFSG TGAASAIGLM GLHGNKHVMW KKVCGVFGKF CHRAAPSLPL TLLAAVVFMF LVVLDAIKLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)