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AT4G23980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 9
Curator
Summary (TAIR10)
Encodes auxin response factor 9 (ARF9).
Computational
Description (TAIR10)
auxin response factor 9 (ARF9); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1); Has 2797 Blast hits to 2432 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 2; Plants - 2739; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioGrid:13787eggNOG:ENOG410IIQIeggNOG:ENOG410YECHEMBL:AC002343EMBL:AF082176EMBL:AF344312EMBL:AK221865
EMBL:AK228263EMBL:AL078468EMBL:AL161560EMBL:CP002687EnsemblPlants:AT4G23980EnsemblPlants:AT4G23980.1entrez:828498
ExpressionAtlas:Q9XED8Gene3D:2.40.330.10GeneID:828498Genevisible:Q9XED8GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009734hmmpanther:PTHR31384hmmpanther:PTHR31384:SF1HOGENOM:HOG000241141InParanoid:Q9XED8IntAct:Q9XED8
InterPro:IPR000270InterPro:IPR003340InterPro:IPR010525InterPro:IPR015300InterPro:IPR033389KEGG:ath:AT4G23980OMA:HWDEPAS
PaxDb:Q9XED8Pfam:PF02309Pfam:PF02362Pfam:PF06507Pfam:Q9XED8Pfscan:PS50863Pfscan:PS51745
PhylomeDB:Q9XED8PIR:T08917PRIDE:Q9XED8PRO:PR:Q9XED8PROSITE:PS50863PROSITE:PS51745ProteinModelPortal:Q9XED8
Proteomes:UP000006548RefSeq:NP_001031706.1RefSeq:NP_194129.1SMART:SM01019SMR:Q9XED8STRING:3702.AT4G23980.1SUPFAM:SSF101936
SUPFAM:SSF54277TAIR:AT4G23980tair10-symbols:ARF9UniGene:At.3396UniProt:Q9XED8
Coordinates (TAIR10) chr4:+:12451592..12454737
Molecular Weight (calculated) 72281.80 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.60
Length 638 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)