AT1G52820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.728 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G03070.1); Has 7837 Blast hits to 7765 proteins in 980 species: Archae - 0; Bacteria - 1096; Metazoa - 64; Fungi - 795; Plants - 4683; Viruses - 0; Other Eukaryotes - 1199 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19669216..19670321 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36421.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 317 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSETPLLPL RLPVIDFSNK NLKPGEPEWD LTRADVQKAL QDYGYFEASF DRIPFELRKS VFGALEELFD LPLQTKLRNV SKKPFHGYVG QYPMVPLYES 101: MGIDDSDIAE KVDAFTEKLW PQGNISFSTT IQSFSKKLSE LDITIRRMIM ESFGLDKYID EHLHSTNYLL RVMKYKGPDT EETKVGLNAH TDKNIVTILY 201: QNHVEGLEVQ TKDKNWIKVK PTQDSFTVMI GDSLYALLNG RLHSPYHRVM MTGTETRYSL GLFSIPKAGH IVSSPDELVD EEHPRLFKPF DHVEFLQFYY 301: TEAGQRSQSA LKTYCGI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)