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AT4G02195.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 42
Curator
Summary (TAIR10)
member of SYP4 Gene Family
Computational
Description (TAIR10)
syntaxin of plants 42 (SYP42); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 41 (TAIR:AT5G26980.2); Has 2124 Blast hits to 2113 proteins in 267 species: Archae - 1; Bacteria - 23; Metazoa - 914; Fungi - 468; Plants - 361; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
Protein Annotations
BioGrid:12798eggNOG:COG5325eggNOG:KOG0809EMBL:AF001308EMBL:AF075597EMBL:AF154574EMBL:CP002687
EnsemblPlants:AT4G02195EnsemblPlants:AT4G02195.1entrez:827505ExpressionAtlas:Q9SWH4GeneID:827505Genevisible:Q9SWH4GO:GO:0000149
GO:GO:0005802GO:GO:0006886GO:GO:0006906GO:GO:0007030GO:GO:0007034GO:GO:0009306GO:GO:0016021
GO:GO:0031201GO:GO:0048278GO:GO:1900150Gramene:AT4G02195.1hmmpanther:PTHR19957hmmpanther:PTHR19957:SF108HOGENOM:HOG000190358
InParanoid:Q9SWH4IntAct:Q9SWH4InterPro:IPR000727InterPro:IPR006011InterPro:IPR006012InterPro:IPR010989KEGG:ath:AT4G02195
KO:K08489OMA:CKSARAPPaxDb:Q9SWH4Pfam:PF05739Pfam:Q9SWH4Pfscan:PS50192PhylomeDB:Q9SWH4
PIR:T01521PRIDE:Q9SWH4PRO:PR:Q9SWH4PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q9SWH4Proteomes:UP000006548
RefSeq:NP_567223.1scanprosite:PS00914SMART:SM00397SMART:SM00503SMR:Q9SWH4STRING:3702.AT4G02195.1SUPFAM:SSF47661
TAIR:AT4G02195tair10-symbols:ATSYP42tair10-symbols:ATTLG2Btair10-symbols:SYP42tair10-symbols:TLG2BTMHMM:TMhelixUniGene:At.15659
UniProt:Q0WNW7UniProt:Q9SWH4
Coordinates (TAIR10) chr4:-:970099..972192
Molecular Weight (calculated) 36434.60 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.53
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)