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AT2G25310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF2012)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784), Protein of unknown function DUF2012 (InterPro:IPR019008); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2012) (TAIR:AT4G32130.1); Has 307 Blast hits to 307 proteins in 138 species: Archae - 0; Bacteria - 14; Metazoa - 141; Fungi - 68; Plants - 50; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IA7eggNOG:KOG3306EMBL:BT004317EMBL:BT006136EMBL:CP002685EnsemblPlants:AT2G25310EnsemblPlants:AT2G25310.1
entrez:817069Gene3D:2.60.40.1120GeneID:817069GO:GO:0005783GO:GO:0016021GO:GO:0030246Gramene:AT2G25310.1
hmmpanther:PTHR13605HOGENOM:HOG000029070InterPro:IPR013784InterPro:IPR014766InterPro:IPR019008KEGG:ath:AT2G25310OMA:YETREPF
Pfam:PF09430PhylomeDB:Q84JM6Proteomes:UP000006548RefSeq:NP_180103.2STRING:3702.AT2G25310.1SUPFAM:SSF49452TAIR:AT2G25310
TMHMM:TMhelixUniGene:At.39037UniProt:Q84JM6
Coordinates (TAIR10) chr2:-:10777436..10779123
Molecular Weight (calculated) 23429.80 Da
IEP (calculated) 8.69
GRAVY (calculated) 0.12
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMTSIIRSS PTLAFIVLQI CFIFFASTFP CSSGSEDSYT ITGRVKIPPS NVIGHIAKFS NVKVILNGGQ KITFLRPDGY FTFHEVPAGT HLIEVSAMGY
101: FFSPVRVDVS ARHRGKVQAT LTETRRSLTE LVLEPLKEEQ YYEIREPFNI MSIVKSPMGL MVGFMVVVVF LMPKLMENID PEEMKQAQEE MRRQGVPSLT
201: SLLPGAGASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)