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AT2G22670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indoleacetic acid-induced protein 8
Curator
Summary (TAIR10)
IAA8 (IAA8) gene is auxin inducible.
Computational
Description (TAIR10)
indoleacetic acid-induced protein 8 (IAA8); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 9 (TAIR:AT5G65670.2); Has 1685 Blast hits to 1683 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1684; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:2151eggNOG:ENOG410IV98eggNOG:ENOG4111VTJEMBL:AC006340EMBL:AF334714EMBL:AY059905EMBL:AY070399
EMBL:AY087635EMBL:AY096452EMBL:AY114671EMBL:CP002685EMBL:U18410EnsemblPlants:AT2G22670EnsemblPlants:AT2G22670.1
EnsemblPlants:AT2G22670.3entrez:816798ExpressionAtlas:Q38826GeneID:816798Genevisible:Q38826GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009734GO:GO:1901332hmmpanther:PTHR31734hmmpanther:PTHR31734:SF18HOGENOM:HOG000238261InParanoid:Q38826
IntAct:Q38826InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT2G22670KO:K14484PANTHER:PTHR31734
PaxDb:Q38826Pfam:PF02309Pfam:Q38826Pfscan:PS51745PhylomeDB:Q38826PIR:S58495PRIDE:Q38826
PRO:PR:Q38826PROSITE:PS51745ProteinModelPortal:Q38826Proteomes:UP000006548RefSeq:NP_001077943.1RefSeq:NP_179852.1SMR:Q38826
STRING:3702.AT2G22670.4SUPFAM:SSF54277TAIR:AT2G22670tair10-symbols:IAA8UniGene:At.10796UniGene:At.67150UniProt:Q38826
Coordinates (TAIR10) chr2:+:9637136..9638459
Molecular Weight (calculated) 35119.90 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.49
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)