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AT1G04240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AUX/IAA transcriptional regulator family protein
Curator
Summary (TAIR10)
SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.
Computational
Description (TAIR10)
SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1); Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1822; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:24805DNASU:839570eggNOG:ENOG410IX07eggNOG:ENOG410YIDV
EMBL:EU351389EMBL:EU351390EMBL:EU351391EMBL:EU351392
EMBL:EU351393EMBL:EU351394EMBL:EU351396EMBL:EU351397
EMBL:EU351398EMBL:EU351399EMBL:EU351401EMBL:EU351402
EMBL:EU351403EMBL:EU351405EMBL:EU351406EMBL:EU351407
EMBL:EU351408EMBL:EU351410EMBL:EU351411EMBL:EU351412
EMBL:EU351414EMBL:EU351415EMBL:EU351417EMBL:EU351418
EMBL:EU351419EMBL:EU351420EMBL:EU351421EMBL:EU351422
EMBL:EU351423EMBL:EU351424EMBL:EU351426EMBL:EU351427
EMBL:EU351428EMBL:EU351429EMBL:EU351430EMBL:EU351431
EMBL:EU351432EMBL:GU348529EMBL:GU348533EMBL:HM487611
EMBL:HM487612EMBL:HM487613EMBL:HM487614EMBL:HM487615
EMBL:HM487616EMBL:HM487618EMBL:HM487619EMBL:HM487623
EMBL:U18406EnsemblPlants:AT1G04240EnsemblPlants:AT1G04240.1entrez:839570
ExpressionAtlas:B0FV08GeneID:839570GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009734Gramene:AT1G04240.1hmmpanther:PTHR31734
hmmpanther:PTHR31734:SF11InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389
KEGG:ath:AT1G04240KO:K14484OMA:DLSCYKGPANTHER:PTHR31734
Pfam:PF02309Pfam:Q38822Pfscan:PS51745PhylomeDB:B0FV08
PROSITE:PS51745RefSeq:NP_171920.1SMR:B0FV08STRING:3702.AT1G04240.1
SUPFAM:SSF54277TAIR:AT1G04240tair10-symbols:IAA3tair10-symbols:SHY2
UniGene:At.20801UniProt:B0FV08UniProt:Q38822
Coordinates (TAIR10) chr1:-:1128564..1129319
Molecular Weight (calculated) 21521.60 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.68
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)