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AT5G24000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF819)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF819); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF819 (InterPro:IPR008537); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF819) (TAIR:AT5G52540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5505eggNOG:ENOG410IH6GEMBL:AB009056EMBL:CP002688
EnsemblPlants:AT5G24000EnsemblPlants:AT5G24000.1entrez:832465GeneID:832465
GO:GO:0016021Gramene:AT5G24000.1hmmpanther:PTHR34289hmmpanther:PTHR34289:SF2
HOGENOM:HOG000220761InterPro:IPR008537KEGG:ath:AT5G24000OMA:TACAMAT
Pfam:PF05684PhylomeDB:Q9FLW1Proteomes:UP000006548RefSeq:NP_197788.1
TAIR:AT5G24000TMHMM:TMhelixUniGene:At.30982UniProt:Q9FLW1
Coordinates (TAIR10) chr5:-:8110380..8112692
Molecular Weight (calculated) 47147.70 Da
IEP (calculated) 10.47
GRAVY (calculated) 0.75
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLFTVVSP NPLSPTISSL HVSPSRHHLS SSITIRRNKS PPVTLTPHRL VSSRRRRVKV YSQLRFPLIS PDDHWSQWAA LFAAGAFGVW SEKTKIGSMV
101: SGALTSTLLG LAASNLRLIP FETPSYGFFM EFLLPHTIPL LLFRADLRRI IRSTGSLLLA FLIGSVATIV GTVVAFMLVP MRSLGPDNWK IAAALMGSYI
201: GGSLNFVAIS EALQISPSVI AAGVAVDNVI CALHFMVLFA LASKIPPETA SASSPDADMT KDDKLEDKNR VVSTSIALSV SFLICKAAIT LTTLFKIQGV
301: MLPAVTAITI VLATSFPDFF NSLAPSAETI SLILMQVFFT ILGATGSVWN VINTAPSIFL FAAIQVMVHL AVTLVLGKLF CIDMKLLLLA SNANIGGPTT
401: ACAMATAKGW TSLVVPGILS GVFGVSIATF LGIGCGVFVL KRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)