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AT1G78010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNA modification GTPase, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tRNA modification GTPase, putative; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: small GTPase mediated signal transduction, tRNA modification; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), tRNA modification GTPase TrmE (InterPro:IPR004520), GTP-binding protein TrmE, N-terminal (InterPro:IPR018948), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 37224 Blast hits to 31482 proteins in 3092 species: Archae - 387; Bacteria - 27903; Metazoa - 467; Fungi - 287; Plants - 322; Viruses - 0; Other Eukaryotes - 7858 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0486eggNOG:KOG1191EMBL:BT015351EMBL:BT015722
EMBL:CP002684EnsemblPlants:AT1G78010EnsemblPlants:AT1G78010.1entrez:844136
Gene3D:1.20.120.430Gene3D:3.30.1360.120Gene3D:3.40.50.300GeneID:844136
GO:GO:0003924GO:GO:0005525GO:GO:0005622GO:GO:0006400
Gramene:AT1G78010.1HAMAP:MF_00379hmmpanther:PTHR11649hmmpanther:PTHR11649:SF56
HOGENOM:HOG000200713InterPro:IPR004520InterPro:IPR005225InterPro:IPR006073
InterPro:IPR018948InterPro:IPR025867InterPro:IPR027266InterPro:IPR027368
InterPro:IPR027417InterPro:IPR031168KEGG:ath:AT1G78010KO:K03650
ncoils:CoilOMA:LFGRFCIPfam:PF01926Pfam:PF10396
Pfam:PF12631Pfscan:PS51709PhylomeDB:Q66GQ1PROSITE:PS51709
Proteomes:UP000006548RefSeq:NP_177924.3SMR:Q66GQ1STRING:3702.AT1G78010.1
SUPFAM:SSF52540TAIR:AT1G78010TIGRfam:TIGR00231TIGRfam:TIGR00450
TIGRFAMs:TIGR00231TIGRFAMs:TIGR00450UniGene:At.21626UniProt:Q66GQ1
Coordinates (TAIR10) chr1:+:29333535..29336297
Molecular Weight (calculated) 61123.40 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.08
Length 560 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSLLCFRSV GVYLLRQATP IITRGGRISR PISKNLCFVL FSSSPKTSLL KPRAQSSENN SLVFKGDERV VGLVGKVVDD AFDKVDRFQS SSTIVAIVTP
101: IGGPPGAVGI VRLSGPKAVE VARRVFRSAK KTKKKESDSD TWRPKSHFVE YGAVVDSNGN VVDEVLAVPM LAPRSYTRED VVELQCHGSE VCLRRVLRTC
201: VEAGARLAEP GEFTLRAFLN GRLDLSQAEN VEKLISAKSS AAADAALEGI QGGFSSLVKS LRAQCIELLT EIEARLDFED EMPPLDIESV INKITSMSQD
301: VESALDTANY DKLLQSGLQI AIVGRPNVGK SSLLNAWSKS ERAIVTEVAG TTRDVVEANV TVRGVPITLL DTAGIRETND IVEKIGVERS ETAAKVADVI
401: IMAVSAVEGW TEEDTELLRK IQSDKPMILV MNKIDCAPPG SCDQLEDQRK KEEVFHKSVF TSAVTGQGIE ELEDAILEIL GLDRVPTGGH QWTVNQRQCE
501: QLVRTKEALV RLREAIEDEI PIDFWTIELR EAALSLAQIS GQDVSEEVLS SIFAKFCIGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)