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AT5G45300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.827
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : beta-amylase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta-amylase 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 1218 Blast hits to 1198 proteins in 187 species: Archae - 0; Bacteria - 92; Metazoa - 210; Fungi - 10; Plants - 824; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1775-MONOMERBioGrid:19815CAZy:GH14EC:3.2.1.2
eggNOG:ENOG410IMY0eggNOG:ENOG410YA7CEMBL:AB020744EMBL:AK117140
EMBL:BT006482EMBL:CP002688EnsemblPlants:AT5G45300EnsemblPlants:AT5G45300.1
entrez:834566Gene3D:3.20.20.80GeneID:834566Genevisible:Q9FH80
GO:GO:0000272GO:GO:0003700GO:GO:0005634GO:GO:0005737
GO:GO:0006355GO:GO:0016161GO:GO:0048831gramene_pathway:3.2.1.2
gramene_pathway:PWY-842hmmpanther:PTHR31352hmmpanther:PTHR31352:SF8HOGENOM:HOG000238755
InParanoid:Q9FH80IntAct:Q9FH80InterPro:IPR001554InterPro:IPR008540
InterPro:IPR013781InterPro:IPR017853iPTMnet:Q9FH80KEGG:00500+3.2.1.2
KEGG:ath:AT5G45300OMA:MAFHEYGPaxDb:Q9FH80Pfam:PF01373
Pfam:PF05687Pfam:Q9FH80PhylomeDB:Q9FH80PRIDE:Q9FH80
PRINTS:PR00750PRO:PR:Q9FH80ProteinModelPortal:Q9FH80Proteomes:UP000006548
RefSeq:NP_001032014.1RefSeq:NP_199343.1SMR:Q9FH80STRING:3702.AT5G45300.1
SUPFAM:SSF51445TAIR:AT5G45300tair10-symbols:BAM8tair10-symbols:BMY2
UniGene:At.30019UniProt:Q9FH80
Coordinates (TAIR10) chr5:+:18353636..18356696
Molecular Weight (calculated) 77164.60 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.48
Length 689 amino acids
Sequence (TAIR10)
(BLAST)
001: MHTLNNTITT TTGSQDPNLD PIPDPDQFPN RNRNQPQSRR PRGFAAAAAA ASIAPTENDV NNGNIAGIGG GEGSSGGGGG GGGKGKRERE KEKERTKLRE
101: RHRRAITSRM LAGLRQYGNF PLPARADMND VIAALAREAG WSVEADGTTY RQSQQPNHVV QFPTRSIESP LSSSTLKNCA KAAIESQQHS VLRNDEKLAP
201: VSLDSIGIAE SDHPGNGRYT SVSPITSVGC LEANQLIQDV HSAEQCNDFT ESFYVPVYAM LPVGIIDNFG QLVDPEGVRQ ELSYMKSLNV DGVVIDCWWG
301: IVEGWNPQKY VWSGYRELFN LIRDFKLKLQ VVMAFHEYGG NASGNVMISL PQWVLKIGKD NPDIFFTDRE GRRSFECLNW SIDKERVLHG RTGIEVYFDF
401: MRSFRSEFDD LFVEGLITAV EIGLGASGEL KYPSFPERMG WIYPGIGEFQ CYDKYSQLSL QKEAKSRGFT FWGKGPENAG QYSSHPHETV FFQERGEYDS
501: YYGRFFLNWY SQLLIGHAEN VLSLANLAFE ETKIIVKIPA IYWSYKTASH AAELTAGYYN PSNRDGYSLV FETLKKYSVT VKFVCPGPQM SPNAHEEALA
601: DPEGLSWQVI NAAWDKGLQI GGENAITCFD RDGCMRLIDI AKPRNHPDGY HFSFFTYRQP SPLVQGSTCF PDLDYFIKRM HGDIRDKQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)