suba logo
AT1G60850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22550958 (2012): plastid
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-directed RNA polymerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 1331 Blast hits to 1329 proteins in 354 species: Archae - 245; Bacteria - 1; Metazoa - 283; Fungi - 347; Plants - 107; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G60850-MONOMERBioCyc:ARA:GQT-1110-MONOMEReggNOG:COG0202eggNOG:KOG1521
EMBL:AC079675EMBL:AK226775EMBL:CP002684EnsemblPlants:AT1G60850
EnsemblPlants:AT1G60850.1EnsemblPlants:AT1G60850.2entrez:842377ExpressionAtlas:Q9C6C2
Gene3D:2.170.120.12GeneID:842377GO:GO:0003899GO:GO:0005666
GO:GO:0005730GO:GO:0005736GO:GO:0006360GO:GO:0006383
Gramene:AT1G60850.1Gramene:AT1G60850.2hmmpanther:PTHR11800hmmpanther:PTHR11800:SF13
InterPro:IPR009025InterPro:IPR011262InterPro:IPR011263KEGG:00230+2.7.7.6
KEGG:00240+2.7.7.6KEGG:ath:AT1G60850KO:K03027OMA:VLIAYNT
Pfam:PF01000Pfam:PF01193PhylomeDB:Q9C6C2PIR:H96633
Proteomes:UP000006548Reactome:R-ATH-1834949RefSeq:NP_176282.1RefSeq:NP_849833.1
SMART:SM00662SMR:Q9C6C2STRING:3702.AT1G60850.1SUPFAM:SSF55257
SUPFAM:SSF56553TAIR:AT1G60850tair10-symbols:AAC42tair10-symbols:ATRPAC42
UniGene:At.8270UniProt:Q9C6C2
Coordinates (TAIR10) chr1:-:22398078..22400155
Molecular Weight (calculated) 41782.00 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.26
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTKAEKQFA KNFNIDDLPD VPAGLPPHLK AQQTRVVSKN NAPAHTASAI YSGTYVSSTE EDDNVKLGNF YDNFKVDVVS LTKTDMEFDM IGIDAAFANA
101: FRRILIAEVP SMAIEKVLIA YNTSVIIDEV LAHRMGLIPI AADPRLFEYL SEHDQANEKN TIVFKLHVKC PKNRPRLKVL TSDLKWLPNG SELLRESENK
201: TSKPKTYTSF SCSQDSLPEF ANNPITPCDL DILIAKLAPG QEIELEAHAV KGIGKTHAKW SPVGTAWYRM HPEVVLRGEV EDELAERLVN VCPQNVFDIE
301: DMGKGKKRAT VAQPRKCTLC KECVRDDDLV DHVDLGSVKN HFIFNIESTG SLPPEVLFTE AVKILEAKCE AITDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)