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AT4G11920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cell cycle switch protein 52 A2
Curator
Summary (TAIR10)
Encodes a putative activator of the anaphase-promoting complex/cyclosome. Promotes exit from the cell cycle and entry into the endocycle leading to endoreduplication.
Computational
Description (TAIR10)
cell cycle switch protein 52 A2 (CCS52A2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: FIZZY-related 2 (TAIR:AT4G22910.1); Has 45928 Blast hits to 23758 proteins in 696 species: Archae - 56; Bacteria - 7022; Metazoa - 17569; Fungi - 10333; Plants - 5514; Viruses - 0; Other Eukaryotes - 5434 (source: NCBI BLink).
Protein Annotations
BioGrid:12097eggNOG:COG2319eggNOG:ENOG410IMNXEMBL:AL078606
EMBL:AL161533EMBL:AY063875EMBL:AY091235EMBL:CP002687
EnsemblPlants:AT4G11920EnsemblPlants:AT4G11920.1entrez:826799Gene3D:2.130.10.10
GeneID:826799Genevisible:Q8VZS9GO:GO:0005634GO:GO:0005737
GO:GO:0007067GO:GO:0008361GO:GO:0010492GO:GO:0016567
GO:GO:0032877GO:GO:0051301GO:GO:0051488GO:GO:0097027
Gramene:AT4G11920.1hmmpanther:PTHR19918hmmpanther:PTHR19918:SF1HOGENOM:HOG000195514
InParanoid:Q8VZS9IntAct:Q8VZS9InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR024977InterPro:IPR033010
iPTMnet:Q8VZS9KEGG:ath:AT4G11920KO:K03364OMA:RQINHQN
PANTHER:PTHR19918PaxDb:Q8VZS9Pfam:PF00400Pfam:PF12894
Pfam:Q8VZS9Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q8VZS9
PIR:T09351PRIDE:Q8VZS9PRO:PR:Q8VZS9PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q8VZS9Proteomes:UP000006548
Reactome:R-ATH-68949Reactome:R-ATH-69656RefSeq:NP_192929.2scanprosite:PS00678
SMART:SM00320SMR:Q8VZS9STRING:3702.AT4G11920.1SUPFAM:SSF50978
TAIR:AT4G11920tair10-symbols:CCS52A2tair10-symbols:FZR1UniGene:At.27160
UniPathway:UPA00143UniProt:Q8VZS9
Coordinates (TAIR10) chr4:-:7160618..7163257
Molecular Weight (calculated) 52332.70 Da
IEP (calculated) 9.07
GRAVY (calculated) -0.38
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDESTTPK KKSDSQLNLP PSMNRPTVSL ESRINRLIDS NHYHSPSKPI YSDRFIPSRS GSNFALFDLA SSSPNKKDGK EDGAGSYASL LKTALFGPVT
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)