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AT2G41050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PQ-loop repeat family protein / transmembrane family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT4G36850.1); Has 930 Blast hits to 673 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 545; Plants - 89; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111FM2eggNOG:KOG2913EMBL:AY080611EMBL:AY133749
EMBL:CP002685EnsemblPlants:AT2G41050EnsemblPlants:AT2G41050.1entrez:818704
GeneID:818704GO:GO:0016021Gramene:AT2G41050.1hmmpanther:PTHR16201
hmmpanther:PTHR16201:SF34HOGENOM:HOG000159593InterPro:IPR006603KEGG:ath:AT2G41050
OMA:LSESRTMPfam:PF04193PhylomeDB:Q8RXY4Proteomes:UP000006548
RefSeq:NP_850340.1SMART:SM00679STRING:3702.AT2G41050.1TAIR:AT2G41050
TMHMM:TMhelixUniGene:At.12544UniGene:At.42876UniProt:Q8RXY4
Coordinates (TAIR10) chr2:-:17123388..17125622
Molecular Weight (calculated) 41808.90 Da
IEP (calculated) 8.13
GRAVY (calculated) 0.12
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLHSSFRDG LSLSLGIISV ISWGVAEIPQ IMTNYSEKST EGLSITFLTT WMIGDIFNLL GCLMEPATLP TQFYMALLYT VTTSVLYVQS IYYGHIYPRL
101: KNRRDQMVEA ERISNIISDV KIPGRWRNSS DTTTCGGQTT PITMIPGSQR TSFTGRELFY TSARSLSSSH TPPAGSVLAQ RMARGYSEPT LEEPLLPEDV
201: THPSTKSLLC VVSVFLFLGT FNLPNLLSES RTMALGEGDR VFVVRAARKL LQVTSSNVAE HSGGESSRIG MFLGWAMAAI YMGGRLPQIC LNMRRGHVEG
301: LNPLMFFFAL VGNMTYVASI LVNSVEWLKL APNLPWLVDA GGCVVLDFLI LLQFFHFRCR KDKDTDKKKH ETAEAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)