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AT3G56160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sodium Bile acid symporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sodium Bile acid symporter family; FUNCTIONS IN: bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); Has 3096 Blast hits to 3087 proteins in 1049 species: Archae - 42; Bacteria - 2090; Metazoa - 108; Fungi - 101; Plants - 149; Viruses - 0; Other Eukaryotes - 606 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0385eggNOG:KOG4821EMBL:AL163763EMBL:CP002686
EnsemblPlants:AT3G56160EnsemblPlants:AT3G56160.1entrez:824782GeneID:824782
Genevisible:F4IZC4GO:GO:0006810GO:GO:0009507GO:GO:0009941
GO:GO:0016021Gramene:AT3G56160.1hmmpanther:PTHR18640hmmpanther:PTHR18640:SF9
InParanoid:F4IZC4InterPro:IPR016833KEGG:ath:AT3G56160KO:K14347
OMA:PCGRRWIPANTHER:PTHR18640PaxDb:F4IZC4Pfam:F4IZC4
Pfam:PF13593PIR:T47733PRIDE:F4IZC4PRO:PR:F4IZC4
ProteinModelPortal:F4IZC4Proteomes:UP000006548RefSeq:NP_191175.2STRING:3702.AT3G56160.1
TAIR:AT3G56160TCDB:2.A.28.3.2TMHMM:TMhelixUniGene:At.34960
UniProt:F4IZC4
Coordinates (TAIR10) chr3:-:20837733..20841541
Molecular Weight (calculated) 46532.80 Da
IEP (calculated) 10.47
GRAVY (calculated) 0.57
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIASTLAST QNPFLCLRQP PSPGNRSVVF RRCQDPCGRR WISRSIRACQ PSDKVSGQFP FDFMYSSMLI PSSCGEWNRI HLGGDGGISA SAQRLYFGKE
101: LLSFASDNFL PLALVSGVGL GFANPTLGCL ADKYSFTKIS TCGIFIISGL TLRTEAIGAA VKGWPLGLFG LISILLLTPS FSRLIMLVQL QPRELVTGLG
201: IFCCMPTTLS SGVALTHLAG GNAALALAVT VASNLLGILT IPFWVSRYIA GGVGVSFPTD QLFRSLIVTL LIPLIIGKVI RESFKGFANF VDNNRKLFSK
301: INAICLSLVP WIQVSRSRSL LLSVQPKVFL AAVGIGILLH LSLLAFNAVS IRILSGLTGG SKSSKENSTA VLLVSSQKTL PVMVAVVEQL GGAFGETGLL
401: VLPCVAAHLN QIMIDSVLVN LWLRRGKDTS TKVKTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)