AT3G56160.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Sodium Bile acid symporter family | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Sodium Bile acid symporter family; FUNCTIONS IN: bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657); Has 3096 Blast hits to 3087 proteins in 1049 species: Archae - 42; Bacteria - 2090; Metazoa - 108; Fungi - 101; Plants - 149; Viruses - 0; Other Eukaryotes - 606 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:20837733..20841541 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 46532.80 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.47 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.57 | ||||||||||||||||||||||||||||||||||||||||
Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIASTLAST QNPFLCLRQP PSPGNRSVVF RRCQDPCGRR WISRSIRACQ PSDKVSGQFP FDFMYSSMLI PSSCGEWNRI HLGGDGGISA SAQRLYFGKE 101: LLSFASDNFL PLALVSGVGL GFANPTLGCL ADKYSFTKIS TCGIFIISGL TLRTEAIGAA VKGWPLGLFG LISILLLTPS FSRLIMLVQL QPRELVTGLG 201: IFCCMPTTLS SGVALTHLAG GNAALALAVT VASNLLGILT IPFWVSRYIA GGVGVSFPTD QLFRSLIVTL LIPLIIGKVI RESFKGFANF VDNNRKLFSK 301: INAICLSLVP WIQVSRSRSL LLSVQPKVFL AAVGIGILLH LSLLAFNAVS IRILSGLTGG SKSSKENSTA VLLVSSQKTL PVMVAVVEQL GGAFGETGLL 401: VLPCVAAHLN QIMIDSVLVN LWLRRGKDTS TKVKTA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)