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AT1G21350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2579 Blast hits to 2579 proteins in 331 species: Archae - 32; Bacteria - 684; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:ENOG410IEXWEMBL:BT002980EMBL:BT015113
EMBL:CP002684EnsemblPlants:AT1G21350EnsemblPlants:AT1G21350.1entrez:838734
ExpressionAtlas:Q84WN4Gene3D:3.40.30.10GeneID:838734GO:GO:0016209
GO:GO:0016491Gramene:AT1G21350.1hmmpanther:PTHR10681hmmpanther:PTHR10681:SF91
HOGENOM:HOG000004976InterPro:IPR000866InterPro:IPR012336KEGG:ath:AT1G21350
Pfam:PF00578Proteomes:UP000006548RefSeq:NP_173557.2SMR:Q84WN4
STRING:3702.AT1G21350.3SUPFAM:SSF52833TAIR:AT1G21350UniGene:At.41661
UniProt:Q84WN4
Coordinates (TAIR10) chr1:-:7477376..7478519
Molecular Weight (calculated) 17083.40 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.28
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MFICNHCPFV IHLKKDIVKL CNFYMKKGLA VVAISSNSVV THPQDGPEFM AEDAKVFKYP FPYLYDESQE VAREFGAVCT PEFFLYKKDG RRPFELVYHG
101: QFDDSRPSSN SPVTGRDLSL AIDLSLSCQP IPSNQKPSVG CSIKWHPETK S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)