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AT3G24460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.537
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Serinc-domain containing serine and sphingolipid biosynthesis protein; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT4G13345.1); Has 800 Blast hits to 764 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 147; Plants - 141; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP7KeggNOG:KOG2592EMBL:AY064147EMBL:BT010591
EMBL:CP002686EnsemblPlants:AT3G24460EnsemblPlants:AT3G24460.1entrez:822036
GeneID:822036GO:GO:0016021Gramene:AT3G24460.1hmmpanther:PTHR10383
HOGENOM:HOG000029481InterPro:IPR005016KEGG:ath:AT3G24460OMA:NDCCRSE
PANTHER:PTHR10383Pfam:PF03348PhylomeDB:Q8VZI4Proteomes:UP000006548
RefSeq:NP_189089.3TAIR:AT3G24460TMHMM:TMhelixUniGene:At.45826
UniProt:Q8VZI4
Coordinates (TAIR10) chr3:-:8886160..8889717
Molecular Weight (calculated) 46675.90 Da
IEP (calculated) 8.24
GRAVY (calculated) 0.32
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: METGTSVSNN NQSIRNDSYE AIKNGSWFNQ FRNGCNPWMA RYVYGLIFLI ANLLAWAARD YGRGALRKVT RFKNCKGGEN CLGTDGVLRV SLGCFLFYFV
101: MFLSTLGTSK THSSRDRWHS GWWFVKLIMW PALTIIPFLL PSSIIHLYGE IAHFGAGVFL LIQLISVISF IQWLNECYQS QKDAERCRVY VMLLSTTSYT
201: VCIVGVILMY IWYAPDSSCL LNIFFITWTL FLIQLMTSIA LHPKVNAGYL TPALMGLYVV FICWCAIRSE PVGESCNRKA AASNRTDWLT IISFVVALLA
301: MVIATFSTGI DSQCFQFKKD ENDQEEEAED DVPYGYGFFH FVFATGAMYF AMLLIGWNTH HPMKKWTIDV GWTSTWVRVV NEWLAVCVYI WMLVAPLILK
401: SRRQTPTGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)