AT3G24460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.537 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Serinc-domain containing serine and sphingolipid biosynthesis protein; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT4G13345.1); Has 800 Blast hits to 764 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 147; Plants - 141; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8886160..8889717 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46675.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.32 | ||||||||||||||||||||||||||||
| Length | 409 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METGTSVSNN NQSIRNDSYE AIKNGSWFNQ FRNGCNPWMA RYVYGLIFLI ANLLAWAARD YGRGALRKVT RFKNCKGGEN CLGTDGVLRV SLGCFLFYFV 101: MFLSTLGTSK THSSRDRWHS GWWFVKLIMW PALTIIPFLL PSSIIHLYGE IAHFGAGVFL LIQLISVISF IQWLNECYQS QKDAERCRVY VMLLSTTSYT 201: VCIVGVILMY IWYAPDSSCL LNIFFITWTL FLIQLMTSIA LHPKVNAGYL TPALMGLYVV FICWCAIRSE PVGESCNRKA AASNRTDWLT IISFVVALLA 301: MVIATFSTGI DSQCFQFKKD ENDQEEEAED DVPYGYGFFH FVFATGAMYF AMLLIGWNTH HPMKKWTIDV GWTSTWVRVV NEWLAVCVYI WMLVAPLILK 401: SRRQTPTGT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)