AT1G04520.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.967 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : plasmodesmata-located protein 2 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
plasmodesmata-located protein 2 (PDLP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 3 (TAIR:AT2G33330.1); Has 1091 Blast hits to 1028 proteins in 65 species: Archae - 0; Bacteria - 64; Metazoa - 5; Fungi - 13; Plants - 1007; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:1231852..1233787 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32766.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 307 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGLSISFLSI IMMMCLLFPD LNVVVKSATT EYTTLIYKGC ARQQFSDPSG LYSQALSAMF GSLVSQSTKT RFYKTTTGTS TTTITGLFQC RGDLSNHDCY 101: NCVSRLPVLS DKLCGKTIAS RVQLSGCYLL YEVSGFSQIS GMEMLFKTCG KNNIAGTGFE ERRDTAFGVM QNGVVSGHGF YATTYESVYV LGQCEGDVGD 201: TDCSGCVKNA LEKAQVECGS SISGQIYLHK CFIAYSYYPN GVPRRSSSSS SSSSSSSSGS SNSDPSTSTG ATGKTVAIIV GGAAGVGFLV ICLLFAKNLM 301: RKKHDDY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)