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AT1G04520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.967
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 18215111
SwissProt : extracellular 16381842
TAIR : plasma membrane 18215111
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata-located protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plasmodesmata-located protein 2 (PDLP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 3 (TAIR:AT2G33330.1); Has 1091 Blast hits to 1028 proteins in 65 species: Archae - 0; Bacteria - 64; Metazoa - 5; Fungi - 13; Plants - 1007; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFQVeggNOG:ENOG410YCB5EMBL:AC000104EMBL:BT010866
EMBL:BT011789EMBL:CP002684EnsemblPlants:AT1G04520EnsemblPlants:AT1G04520.1
entrez:839502GeneID:839502Genevisible:Q6NM73GO:GO:0009506
GO:GO:0010497GO:GO:0016021GO:GO:0046739Gramene:AT1G04520.1
hmmpanther:PTHR32080hmmpanther:PTHR32080:SF4HOGENOM:HOG000083529InParanoid:Q6NM73
InterPro:IPR002902KEGG:ath:AT1G04520OMA:CGKTIASPaxDb:Q6NM73
Pfam:PF01657Pfam:Q6NM73Pfscan:PS51473PhylomeDB:Q6NM73
PIR:F86177PRIDE:Q6NM73PRO:PR:Q6NM73PROSITE:PS51473
ProteinModelPortal:Q6NM73Proteomes:UP000006548RefSeq:NP_171946.2SMR:Q6NM73
STRING:3702.AT1G04520.1TAIR:AT1G04520tair10-symbols:PDLP2TCDB:1.I.2.1.1
TMHMM:TMhelixUniGene:At.48134UniProt:Q6NM73
Coordinates (TAIR10) chr1:+:1231852..1233787
Molecular Weight (calculated) 32766.00 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.02
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSISFLSI IMMMCLLFPD LNVVVKSATT EYTTLIYKGC ARQQFSDPSG LYSQALSAMF GSLVSQSTKT RFYKTTTGTS TTTITGLFQC RGDLSNHDCY
101: NCVSRLPVLS DKLCGKTIAS RVQLSGCYLL YEVSGFSQIS GMEMLFKTCG KNNIAGTGFE ERRDTAFGVM QNGVVSGHGF YATTYESVYV LGQCEGDVGD
201: TDCSGCVKNA LEKAQVECGS SISGQIYLHK CFIAYSYYPN GVPRRSSSSS SSSSSSSSGS SNSDPSTSTG ATGKTVAIIV GGAAGVGFLV ICLLFAKNLM
301: RKKHDDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)