AT1G16150.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.959 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : wall associated kinase-like 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
wall associated kinase-like 4 (WAKL4); CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: wall associated kinase-like 2 (TAIR:AT1G16130.1); Has 121654 Blast hits to 119929 proteins in 4418 species: Archae - 143; Bacteria - 13875; Metazoa - 44623; Fungi - 10480; Plants - 34034; Viruses - 478; Other Eukaryotes - 18021 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:5532415..5534877 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 86797.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 779 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKKETQNLQC IPLVISVLSL FGVSSARKPP YLCNRVCGGI SIPFPFGIGG KECYLNPWYE VVCNTTTSVP FLSRINRELV NIYLPDPTEY YSNGVVHIKG 101: PVTSSGCSTG TSQPLTPQPL NVAGQGSPYF LTDKNLLMAV GCNVKAVMMD VKSQIIGCES SCDERNSSSQ VVRNKICSGN KCCQTRIPEG QPQVIGVNIE 201: IPENKNTTEG GCKVAFLTSN KYSSLNVTEP EEFHSDGYAV VELGWYFDTS DSRVLSPIGC MNVSDASQDG GYGSETICVC SYGYFSGFSY RSCYCNSMGY 301: AGNPFLPGGC VDIDECKLEI GRKRCKDQSC VNKPGWFTCE PKKPGQIKPV FQGKSQFDFI LNVVLKILLF CVLIGSALLL FAFGIFGLYK FIKKQRRSSR 401: MRVFFRRNGG MLLKQQLARK EGNVEMSKIF SSNELEKATD NFNTNRVLGQ GGQGTVYKGM LVDGRIVAVK RSKAMDEDKV EEFINEVVVL AQINHRNIVK 501: LLGCCLETEV PVLVYEFVPN GDLCKRLRDE CDDYIMTWEV RLHIAIEIAG ALSYLHSAAS FPIYHRDIKT TNILLDEKYQ VKVSDFGTSR SVTIDQTHLT 601: TQVAGTFGYV DPEYFQSSKF TDKSDVYSFG VVLVELITGK NPSSRVQSEE NRGFAAHFVA AVKENRFLDI VDERIKDECN LDQVMAVAKL AKRCLNRKGK 701: KRPNMREVSV ELERIRSSSY KSEIHNDDDD DDDDDDEDDQ AMELNIEETW DVGMTAPASM FNNGSPASDV EPLVPLRTW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)