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AT1G05200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate receptor 3.4
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 6705 Blast hits to 6546 proteins in 599 species: Archae - 47; Bacteria - 1309; Metazoa - 4441; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).
Protein Annotations
BioGrid:24503eggNOG:ENOG410ISQZeggNOG:ENOG410ZZ8PEMBL:AC000098
EMBL:AF167355EMBL:AK118206EMBL:AY072070EMBL:CP002684
EnsemblPlants:AT1G05200EnsemblPlants:AT1G05200.1EnsemblPlants:AT1G05200.2entrez:839268
ExpressionAtlas:Q8GXJ4GeneID:839268Genevisible:Q8GXJ4GO:GO:0004970
GO:GO:0005262GO:GO:0005886GO:GO:0006816GO:GO:0008066
GO:GO:0009507GO:GO:0009536GO:GO:0009611GO:GO:0015276
GO:GO:0016021GO:GO:0019722GO:GO:0034220GO:GO:0070417
GO:GO:0070588GO:GO:0071230GO:GO:0071260GO:GO:0071311
hmmpanther:PTHR18966hmmpanther:PTHR18966:SF190HOGENOM:HOG000239558InParanoid:Q8GXJ4
InterPro:IPR001320InterPro:IPR001638InterPro:IPR001828InterPro:IPR017103
InterPro:IPR028082KEGG:ath:AT1G05200KO:K05387OMA:ECSMQIS
PaxDb:Q8GXJ4Pfam:PF00060Pfam:PF00497Pfam:PF01094
Pfam:Q8GXJ4PhylomeDB:Q8GXJ4PIR:D86186PIR:T51135
PIRSF:PIRSF037090PRIDE:Q8GXJ4PRO:PR:Q8GXJ4ProteinModelPortal:Q8GXJ4
Proteomes:UP000006548RefSeq:NP_001030971.1RefSeq:NP_172012.2SMART:SM00079
SMR:Q8GXJ4STRING:3702.AT1G05200.1SUPFAM:SSF53822SUPFAM:SSF53850
TAIR:AT1G05200tair10-symbols:ATGLR3.4tair10-symbols:GLR3.4tair10-symbols:GLUR3
TCDB:1.A.10.1.10TMHMM:TMhelixUniGene:At.10412UniGene:At.66937
UniProt:Q53YX3UniProt:Q8GXJ4
Coordinates (TAIR10) chr1:+:1505642..1509002
Molecular Weight (calculated) 107213.00 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.07
Length 959 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL
101: NIIFQDSNCS GFIGTMGALQ LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ MHAIADFLSY SGWRQVIAIF
201: VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS
301: DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII
401: LGMNHTGVTG PIQFDSDRNR VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK PPRGWVFPNN GKPLRIGVPN
501: RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY ILYGDGKRNP SYDNLVNEVV ADNFDVAVGD ITIVTNRTRY VDFTQPFIES GLVVVAPVKE
601: AKSSPWSFLK PFTIEMWAVT GGFFLFVGAM VWILEHRFNQ EFRGPPRRQL ITIFWFSFST MFFSHRENTV SSLGRFVLII WLFVVLIINS SYTASLTSIL
701: TIRQLTSRIE GIDSLVTSNE PIGVQDGTFA RNYLINELNI LPSRIVPLKD EEQYLSALQR GPNAGGVAAI VDELPYIEVL LTNSNCKFRT VGQEFTRTGW
801: GFAFQRDSPL AVDMSTAILQ LSEEGELEKI HRKWLNYKHE CSMQISNSED SQLSLKSFWG LFLICGITCF MALTVFFWRV FWQYQRLLPE SADEERAGEV
901: SEPSRSGRGS RAPSFKELIK VVDKREAEIK EILKQKSSKK LKSTQSAAGT SQSQHGEIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)