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AT1G62960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ACC synthase 10
Curator
Summary (TAIR10)
Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.
Computational
Description (TAIR10)
ACC synthase 10 (ACS10); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 12 (TAIR:AT5G51690.1); Has 24899 Blast hits to 24897 proteins in 2866 species: Archae - 734; Bacteria - 16849; Metazoa - 510; Fungi - 690; Plants - 1280; Viruses - 0; Other Eukaryotes - 4836 (source: NCBI BLink).
Protein Annotations
BioGrid:27819EC:2.6.1.-eggNOG:COG0436eggNOG:KOG0256
EMBL:AC011000EMBL:AF348575EMBL:AY054691EMBL:BT008906
EMBL:CP002684EnsemblPlants:AT1G62960EnsemblPlants:AT1G62960.1entrez:842598
Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:842598Genevisible:Q9LQ10
GO:GO:0008483GO:GO:0009058GO:GO:0030170Gramene:AT1G62960.1
gramene_pathway:2.6.1.1gramene_pathway:2.6.1.57gramene_pathway:ASPARTATESYN-PWYgramene_pathway:PWY-5079
gramene_pathway:TYRSYNhmmpanther:PTHR11751hmmpanther:PTHR11751:SF411HOGENOM:HOG000011234
InParanoid:Q9LQ10InterPro:IPR004839InterPro:IPR015421InterPro:IPR015422
InterPro:IPR015424iPTMnet:Q9LQ10KEGG:ath:AT1G62960KO:K14270
MINT:MINT-8059401OMA:DSSPYYVPaxDb:Q9LQ10Pfam:PF00155
Pfam:Q9LQ10PhylomeDB:Q9LQ10PIR:D96654PRIDE:Q9LQ10
PRO:PR:Q9LQ10ProteinModelPortal:Q9LQ10Proteomes:UP000006548RefSeq:NP_564804.1
SMR:Q9LQ10STRING:3702.AT1G62960.1SUPFAM:SSF53383TAIR:AT1G62960
tair10-symbols:ACS10TMHMM:TMhelixUniGene:At.14857UniGene:At.70144
UniProt:Q9LQ10
Coordinates (TAIR10) chr1:-:23318271..23320229
Molecular Weight (calculated) 61019.30 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.28
Length 557 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRTEPNRSR SSNSDSDKNS GNVGGGRTTG MRVIVPLQGV VQGRGGLFLG SVIPCAFFYF LQFYLKRNRK NDESDNSGEQ NSSASSSSSP NSGLPDPTRS
101: QSAGHLTELT GLPRSLSRIL LSPRNSGGAV SVSGRVNCVL KGGDSSPYYV GQKRVEDDPY DELGNPDGVI QLGLAQNNKL SLDDWVLENP KEAISDGLSI
201: SGIASYEPSD GLLELKMAVA GFMTEATKNS VTFDPSQLVL TSGASSAIEI LSFCLADSGN AFLVPTPCSP GYDRDVKWRT GVDIIHVPCR SADNFNMSMV
301: VLDRAFYQAK KRGVRIRGII ISNPSNPMGS LLSRENLYAL LDFARERNIH IISNEIFAGS VHGEEGEFVS MAEIVDTEEN IDRERVHIVY DLSKDLSFRG
401: LRSAAIYSFN ESVLSASRKL TTLSPVSSPT QHLLISAISN PKNVQRFVKT NRQRLQSIYT ELVEGLKELG IECTRSNGGF YCWADMRGLI SSYSEKGEIE
501: LWNKLLNIGK INVIPGSCCH CIEPGWFRIC FSNLSERDVP VVMNRIRKVC ETCKSQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)