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AT2G29670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 535 Blast hits to 340 proteins in 62 species: Archae - 10; Bacteria - 119; Metazoa - 2; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEWZeggNOG:ENOG4111RQ5EMBL:AC005496EMBL:AF375460
EMBL:AY074336EMBL:AY096656EMBL:BT000642EMBL:CP002685
EnsemblPlants:AT2G29670EnsemblPlants:AT2G29670.1entrez:817517Gene3D:1.25.40.10
GeneID:817517Gramene:AT2G29670.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF87
HOGENOM:HOG000241467InterPro:IPR003107InterPro:IPR011990InterPro:IPR013026
InterPro:IPR019734KEGG:ath:AT2G29670OMA:GGQHAIRPfam:PF13432
Pfscan:PS50005Pfscan:PS50293PhylomeDB:O82388PIR:B84699
PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_565685.1
SMART:SM00386SMR:O82388SUPFAM:SSF48452TAIR:AT2G29670
UniGene:At.28743UniProt:O82388
Coordinates (TAIR10) chr2:-:12682309..12684745
Molecular Weight (calculated) 60327.30 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.46
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVKVASSST FLQWTTQPII HQSSSPSQTL ASGTITSPSK RRSTVHDGRF LSCRFVTQRL NRSALFGTPS TKLHRPKSCE LWKSSSSSSR PIKTQSFRRV
101: YSANLDPFSD EEFSKKIQEL TLRFNIPHHD DDENSIEPPW NEMVHLSSIE MKANSVDLPL SLRIIKKKRQ WEEGVKQAGE SACCSMNKAF SSMVFMIREL
201: QSFTLHMREI LFYEDLQEIL LRVREEMQQS FVWLFQQVFS ATPTLMVYVM ILLANFTVYS IGNNSSALAA VAPLPPTITE LTTVSETEET NVKFDSSVVK
301: TFFVSSPSGS IASVGGNNNG GGGNVKPVLS GTDGDGSDGS EQFRTIIPEG VSQLSSSNFG SEPSVSGQDE HRLWNSMVEE AERMQYSNID DSLDQETRKR
401: FVSHVEARVE AEEDTGYFKT ELMYQTELSQ EPNNPLLLAN YAQFLYLVSN DHDRAEEYFK RAVGVEPKDA EAFSKYATFL WRARDDLWAA EETFLEAIDA
501: DPTNSYYAAN YANFLWNTGG DDTCFPLDDE SHEDTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)