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AT5G50630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.971
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G50520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II38eggNOG:ENOG41123EZEMBL:AB023037EMBL:AB025619EMBL:AY039924EMBL:AY150447EMBL:CP002688
EnsemblPlants:AT5G50520.1EnsemblPlants:AT5G50630EnsemblPlants:AT5G50630.1entrez:835120entrez:835132GeneID:835120GeneID:835132
GO:GO:0016021Gramene:AT5G50520.1Gramene:AT5G50630.1hmmpanther:PTHR21576hmmpanther:PTHR21576:SF44InterPro:IPR010658InterPro:IPR020846
KEGG:ath:AT5G50520KEGG:ath:AT5G50630OMA:DSSVILMPfam:PF06813PhylomeDB:Q9LUF8Proteomes:UP000006548RefSeq:NP_568730.1
RefSeq:NP_568735.1STRING:3702.AT5G50630.1SUPFAM:SSF103473TAIR:AT5G50520TAIR:AT5G50630TMHMM:TMhelixUniGene:At.7132
UniGene:At.72860UniProt:Q9LUF8
Coordinates (TAIR10) chr5:-:20603021..20604928
Molecular Weight (calculated) 58851.80 Da
IEP (calculated) 8.63
GRAVY (calculated) 0.66
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTLWRHKLE LLVNDRWLVF VCAMWVQSVA GVGYLFGGSM SPAIKTSLGY NQKQIALLGV AKNLGDAIGF VSGALSEVSP SWVVLLVGAT QNLFGYGVVW
101: LVVTGQLPNL PLWMLFVAIF VGTNGETYYN TASLVSCIHN FPESRGPVVG ILKGFSGLSG AILTQVYLMF NPSHDSSVIL MVALGPPVVV LALLFIVRPV
201: ERSCRTNLRS DDLRFLAIYG FCVVLAVYLL GLLVLQSVFD MTQTIITTSG AILVIFMVVP VLVPFSSVFI SGNNVTSVKP EEGTSNVDQH EARTLIERSD
301: RPPEKKRAPC IGEDFTLLQA LGQADFWLIF MSLVLGVGSG ITIIDNLGQI CYSLGYSNTK IFVSLISISN FLGRVAGGYF SELIIRKLSL PRTLAMSVVQ
401: AIMSLGLIYY AIDWPGKIYV VTIVIGMGYG AHWAIAPASV SDIFGLKSFG SLYNFQITAL PIGSFVFSGV IASNIYDYYA RKQAGPTTET ESLVCTGSVC
501: YSVTCSLMSM LCLMAMVLSL SVVYRTRKFY LRLHHRVSKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)