AT5G50520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G50630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20569680..20571587 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58851.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.66 | ||||||||||||||||||||||||||||||||||||||||
| Length | 540 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMTLWRHKLE LLVNDRWLVF VCAMWVQSVA GVGYLFGGSM SPAIKTSLGY NQKQIALLGV AKNLGDAIGF VSGALSEVSP SWVVLLVGAT QNLFGYGVVW 101: LVVTGQLPNL PLWMLFVAIF VGTNGETYYN TASLVSCIHN FPESRGPVVG ILKGFSGLSG AILTQVYLMF NPSHDSSVIL MVALGPPVVV LALLFIVRPV 201: ERSCRTNLRS DDLRFLAIYG FCVVLAVYLL GLLVLQSVFD MTQTIITTSG AILVIFMVVP VLVPFSSVFI SGNNVTSVKP EEGTSNVDQH EARTLIERSD 301: RPPEKKRAPC IGEDFTLLQA LGQADFWLIF MSLVLGVGSG ITIIDNLGQI CYSLGYSNTK IFVSLISISN FLGRVAGGYF SELIIRKLSL PRTLAMSVVQ 401: AIMSLGLIYY AIDWPGKIYV VTIVIGMGYG AHWAIAPASV SDIFGLKSFG SLYNFQITAL PIGSFVFSGV IASNIYDYYA RKQAGPTTET ESLVCTGSVC 501: YSVTCSLMSM LCLMAMVLSL SVVYRTRKFY LRLHHRVSKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)