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AT3G18480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22923678 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCAAT-displacement protein alternatively spliced product
Curator
Summary (TAIR10)
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast. A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565–689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation.
Computational
Description (TAIR10)
CCAAT-displacement protein alternatively spliced product (CASP); INVOLVED IN: intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASP, C-terminal (InterPro:IPR012955); Has 108439 Blast hits to 62245 proteins in 2877 species: Archae - 1242; Bacteria - 16953; Metazoa - 49041; Fungi - 8922; Plants - 5181; Viruses - 394; Other Eukaryotes - 26706 (source: NCBI BLink).
Protein Annotations
BioGrid:6710eggNOG:ENOG410XPRPeggNOG:KOG0963EMBL:AB026658EMBL:AY056225EMBL:AY142680EMBL:CP002686
EnsemblPlants:AT3G18480EnsemblPlants:AT3G18480.1entrez:821377GeneID:821377Genevisible:Q9LS42GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0006891GO:GO:0016021GO:GO:0030173Gramene:AT3G18480.1hmmpanther:PTHR14043HOGENOM:HOG000029324
InParanoid:Q9LS42InterPro:IPR012955iPTMnet:Q9LS42KEGG:ath:AT3G18480KO:K09313MINT:MINT-8065017ncoils:Coil
OMA:NWEAKEKPaxDb:Q9LS42Pfam:PF08172Pfam:Q9LS42PhylomeDB:Q9LS42PRIDE:Q9LS42PRO:PR:Q9LS42
ProteinModelPortal:Q9LS42Proteomes:UP000006548RefSeq:NP_566611.1STRING:3702.AT3G18480.1TAIR:AT3G18480tair10-symbols:AtCASPtair10-symbols:CASP
TMHMM:TMhelixUniGene:At.21887UniProt:Q9LS42
Coordinates (TAIR10) chr3:+:6336924..6341596
Molecular Weight (calculated) 79688.00 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.91
Length 689 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVSQDGSER DKTPPPSSSS SSSSPIPVVT NFWKEFDLEK EKSLLDEQGL RIAENQENSQ KNRRKLAEST RDFKKASPEN KLSMFNSLLK GYQEEVDNIT
101: KRAKFGENAF LNIYQKLYEA PDPFPALASI AEQDRKLSEV ESENRKMKVE LEEFRTEATH LKNQQATIRR LEERNRQLEQ QMEEKIKEVV EIKQRNLAEE
201: NQKTMELLKD REQALQDQLR QAKDSVSTMQ KLHELAQNQL FELRAQSDEE TAGKQSEVSL LMDEVERAQT RLLTLEREKG HLRSQLQTAN EDTDNKKSDN
301: IDSNSMLENS LTAKEKIISE LNMEIHNVET ALANERESHV AEIKKLNSLL NKKDTIIEEM KKELQERPSA KLVDDLRKKV KILQAVGYNS IEAEDWDAAT
401: TGEEMSKMES LLLDKNRKME HEVTQLKVQL SEKASLLEKA EAKGEELTAK VNEQQRLIQK LEDDILKGYG SKERKGALFD EWEFSEAGVA EQSEPMDQKH
501: VPSEQDQSSM LKVICSQRDR FRARLRETEE EIRRLKEKIG FLTDELEKTK ADNVKLYGKI RYVQDYNHDK VVSRGSKKYV EDLESGFSSD VESKYKKIYE
601: DDINPFAAFS KKEREQRIKD LGIRDRITLS SGRFLLGNKY ARTFAFFYTI GLHVLVFTCL YRMSAYSYLS HGAEETLMTE ATTNLPHGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)