AT4G20270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich receptor-like protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BARELY ANY MERISTEM 3 (BAM3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: regulation of meristem growth, protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, leaf development, floral organ development; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 219938 Blast hits to 139586 proteins in 4977 species: Archae - 151; Bacteria - 21929; Metazoa - 70277; Fungi - 10656; Plants - 90391; Viruses - 423; Other Eukaryotes - 26111 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:10949822..10952924 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110290.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 992 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADKIFTFFL ILSSISPLLC SSLISPLNLS LIRQANVLIS LKQSFDSYDP SLDSWNIPNF NSLCSWTGVS CDNLNQSITR LDLSNLNISG TISPEISRLS 101: PSLVFLDISS NSFSGELPKE IYELSGLEVL NISSNVFEGE LETRGFSQMT QLVTLDAYDN SFNGSLPLSL TTLTRLEHLD LGGNYFDGEI PRSYGSFLSL 201: KFLSLSGNDL RGRIPNELAN ITTLVQLYLG YYNDYRGGIP ADFGRLINLV HLDLANCSLK GSIPAELGNL KNLEVLFLQT NELTGSVPRE LGNMTSLKTL 301: DLSNNFLEGE IPLELSGLQK LQLFNLFFNR LHGEIPEFVS ELPDLQILKL WHNNFTGKIP SKLGSNGNLI EIDLSTNKLT GLIPESLCFG RRLKILILFN 401: NFLFGPLPED LGQCEPLWRF RLGQNFLTSK LPKGLIYLPN LSLLELQNNF LTGEIPEEEA GNAQFSSLTQ INLSNNRLSG PIPGSIRNLR SLQILLLGAN 501: RLSGQIPGEI GSLKSLLKID MSRNNFSGKF PPEFGDCMSL TYLDLSHNQI SGQIPVQISQ IRILNYLNVS WNSFNQSLPN ELGYMKSLTS ADFSHNNFSG 601: SVPTSGQFSY FNNTSFLGNP FLCGFSSNPC NGSQNQSQSQ LLNQNNARSR GEISAKFKLF FGLGLLGFFL VFVVLAVVKN RRMRKNNPNL WKLIGFQKLG 701: FRSEHILECV KENHVIGKGG RGIVYKGVMP NGEEVAVKKL LTITKGSSHD NGLAAEIQTL GRIRHRNIVR LLAFCSNKDV NLLVYEYMPN GSLGEVLHGK 801: AGVFLKWETR LQIALEAAKG LCYLHHDCSP LIIHRDVKSN NILLGPEFEA HVADFGLAKF MMQDNGASEC MSSIAGSYGY IAPEYAYTLR IDEKSDVYSF 901: GVVLLELITG RKPVDNFGEE GIDIVQWSKI QTNCNRQGVV KIIDQRLSNI PLAEAMELFF VAMLCVQEHS VERPTMREVV QMISQAKQPN TF |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)