suba logo
AT1G31130.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKFJeggNOG:ENOG410YFUQEMBL:AC004793EMBL:AF325096EMBL:AY081258EMBL:AY085433EMBL:AY114569
EMBL:CP002684EnsemblPlants:AT1G31130EnsemblPlants:AT1G31130.1entrez:839998GeneID:839998GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0016021Gramene:AT1G31130.1hmmpanther:PTHR33133hmmpanther:PTHR33133:SF12HOGENOM:HOG000238363KEGG:ath:AT1G31130
OMA:VLYFGVHPhylomeDB:Q9SA06PIR:H86436Proteomes:UP000006548RefSeq:NP_564374.1STRING:3702.AT1G31130.1TAIR:AT1G31130
TMHMM:TMhelixUniGene:At.25129UniGene:At.32766UniGene:At.66818UniProt:Q9SA06
Coordinates (TAIR10) chr1:-:11114963..11115928
Molecular Weight (calculated) 35737.70 Da
IEP (calculated) 9.27
GRAVY (calculated) 0.85
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLQPEELQF LTIPQLLQES ISIKKRSPRT FYLITLSFIF PLSFAILAHS LFTQPILAKL DKSDPPNSDR SRHDWTVLLI FQFSYLIFLF AFSLLSTAAV
101: VFTVASLYTG KPVSFSSTLS AIPKVFKRLF ITFLWVALLM FAYNAVFFVF LVMLLVALDL NSLGLAIVAG VIISVLYFGV HVYFTALWHL GSVISVLEPV
201: YGIAAMRKAY ELLKGKTKMA MGLIFVYLFL CGLIGVVFGA VVVHGGGKYG TFTRTLVGGL LVGVLVMVNL VGLLVQSVFY YVCKSYHHQT IDKTALYDQL
301: GGYLGDYVPL KSNIQLEDLD I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)