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AT1G28490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25082856 (2014): Golgi trans-Golgi network
  • PMID:25082856 (2014): plasma membrane
  • PMID:23532067 (2013): Golgi trans-Golgi network
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:15342965 (2004): Golgi trans-Golgi network
  • PMID:15141064 (2004): Golgi
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24344820 (2014): Golgi trans-Golgi network
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 61
Curator
Summary (TAIR10)
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational
Description (TAIR10)
syntaxin of plants 61 (SYP61); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 935 Blast hits to 902 proteins in 210 species: Archae - 0; Bacteria - 8; Metazoa - 293; Fungi - 255; Plants - 233; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Protein Annotations
BioGrid:24984eggNOG:ENOG410ZZA3eggNOG:KOG3202EMBL:AC010155
EMBL:AF355754EMBL:AY072115EMBL:AY150420EMBL:CP002684
EnsemblPlants:AT1G28490EnsemblPlants:AT1G28490.1entrez:839749ExpressionAtlas:Q946Y7
GeneID:839749Genevisible:Q946Y7GO:GO:0000149GO:GO:0005484
GO:GO:0005802GO:GO:0006886GO:GO:0006906GO:GO:0009738
GO:GO:0016021GO:GO:0031201GO:GO:0031902GO:GO:0048193
GO:GO:0048278hmmpanther:PTHR19957hmmpanther:PTHR19957:SF111HOGENOM:HOG000030056
InParanoid:Q946Y7IntAct:Q946Y7InterPro:IPR000727InterPro:IPR006012
InterPro:IPR010989InterPro:IPR015260iPTMnet:Q946Y7ncoils:Coil
OMA:QVVREMKPaxDb:Q946Y7Pfam:PF05739Pfam:PF09177
Pfam:Q946Y7Pfscan:PS50192PhylomeDB:Q946Y7PRIDE:Q946Y7
PRO:PR:Q946Y7PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q946Y7
Proteomes:UP000006548RefSeq:NP_564310.1scanprosite:PS00914SMART:SM00397
SMR:Q946Y7STRING:3702.AT1G28490.1SUPFAM:SSF47661SUPFAM:SSF58038
TAIR:AT1G28490tair10-symbols:ATSYP61tair10-symbols:OSM1tair10-symbols:SYP61
TMHMM:TMhelixUniGene:At.11842UniProt:Q946Y7
Coordinates (TAIR10) chr1:+:10016433..10017842
Molecular Weight (calculated) 27723.20 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.39
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)