AT1G29850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : double-stranded DNA-binding family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 689 Blast hits to 689 proteins in 324 species: Archae - 253; Bacteria - 2; Metazoa - 140; Fungi - 128; Plants - 54; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10447866..10449630 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 14976.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||||||
| Length | 129 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADPELEAIR QRRMQELMAR QGMGKQGNQQ NPEQEKQQED AKREADERRQ MMLSQVLSSQ ARERIARIAL VKPEKARGVE DVILRAAQMG QIVEKVSEER 101: LITLLEQINS QTTKQTKVTY QRRRGVDDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)