AT5G39040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 ASURE: vacuole What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transporter associated with antigen processing protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole. Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
transporter associated with antigen processing protein 2 (TAP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15625660..15629621 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69107.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNKKLLTGG SSKTHGSGSS YRDPLLQNQE DKPKANGSEN GLNDLEHGVV EAANVGFGRV FALAKPDAGK LVIGTIALLI GSTTNLLVPK FGGMIIDIVS 101: RDVKTPEQQT ESLIAVRNAV VIILLIVVIG SICTALRAWL FNSASERVVA RLRKDLFRHL MHQEIAFYDV TKTGELLSRL SEDTQIIKNA ATTNLSEALR 201: NVTTALIGVG FMFTSSWKLT LLALVVVPVI SVAVKQFGRY LRELSHTTQA AAAVAASIAE ESFGAVRTVR SFAKESYMVS QYSKKVDETL KLGLKQAVLV 301: GLFFGGLNAA FTLSVITVVS YGAYLTIYGS MTVGALTSFI LYSLTVGSSV SSLSSLYTTA MKAAGASRRV FQILDRVSSM SSSGDKCPVG NPDGDVELND 401: VWFAYPSRPS HMILKGISLR LTPGSKVALV GPSGGGKTTI ANLIERFYDP LKGKILLNGV SLMEISHQYL HKQISIVSQE PILFNCSVEE NIAYGFDGEA 501: SFTDIENAAK MANAHEFIEA FPDKYNTVVG ERGLRLSGGQ KQRIAIARAL LTNPSVLLLD EATSALDAES EYLVQDAMDS LMAGRTVLVI AHRLSTVKTA 601: DCVAVISDGE VAEKGTHDEL LSLNGIYTNL VKRQLQSSSS VTTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)