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AT4G29140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.913
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: shoot apex, embryo, hypocotyl, root; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G19700.1); Has 10278 Blast hits to 10238 proteins in 1962 species: Archae - 240; Bacteria - 7294; Metazoa - 150; Fungi - 320; Plants - 1306; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AL078470EMBL:AL161574
EMBL:AY082797EMBL:CP002687EnsemblPlants:AT4G29140EnsemblPlants:AT4G29140.1
entrez:829035GeneID:829035Genevisible:Q9SZE2GO:GO:0005770
GO:GO:0006855GO:GO:0006952GO:GO:0010008GO:GO:0010015
GO:GO:0010252GO:GO:0015238GO:GO:0015297GO:GO:0016021
GO:GO:0031348GO:GO:0031902GO:GO:0046620Gramene:AT4G29140.1
hmmpanther:PTHR11206hmmpanther:PTHR11206:SF76HOGENOM:HOG000177026InterPro:IPR002528
KEGG:ath:AT4G29140KO:K03327OMA:IRITVLYPaxDb:Q9SZE2
Pfam:PF01554PhylomeDB:Q9SZE2PIR:T08969ProteinModelPortal:Q9SZE2
Proteomes:UP000006548Reactome:R-ATH-425366RefSeq:NP_194643.1SMR:Q9SZE2
STRING:3702.AT4G29140.1TAIR:AT4G29140TIGRfam:TIGR00797TIGRFAMs:TIGR00797
TMHMM:TMhelixUniGene:At.27582UniGene:At.74037UniGene:At.75271
UniProt:Q9SZE2
Coordinates (TAIR10) chr4:+:14369148..14370746
Molecular Weight (calculated) 57057.00 Da
IEP (calculated) 7.32
GRAVY (calculated) 0.63
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MCNPSTTTTT TGSENQESRT GLFLDLFSIN SFEPTKRNLR HCENRGSPLM AEAVTEAKSL FTLAFPIAVT ALVLYLRSAV SMFFLGQLGD LELAAGSLAI
101: AFANITGYSV LSGLALGMEP LCSQAFGAHR FKLLSLTLHR TVVFLLVCCV PISVLWFNVG KISVYLHQDP DIAKLAQTYL IFSLPDLLTN TLLHPIRIYL
201: RAQGIIHPVT LASLSGAVFH LPANLFLVSY LRLGLTGVAV ASSITNIFVV AFLVCYVWAS GLHAPTWTDP TRDCFRGWAP LLRLAGPSCV SVCLEWWWYE
301: IMIVLCGLLV NPRSTVAAMG VLIQTTSFLY VFPSSLSFAV STRVGNELGA NRPKTAKLTA TVAIVFAAVT GIIAAAFAYS VRNAWGRIFT GDKEILQLTA
401: AALPILGLCE IGNCPQTVGC GVVRGTARPS TAANVNLGAF YLVGMPVAVG LGFWAGIGFN GLWVGLLAAQ ISCAGLMMYV VGTTDWESEA KKAQTLTCAE
501: TVENDIIKAV VASTIDGECD EAEPLIRITV LY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)