AT4G04480.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:2229649..2230845 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43964.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||
| Length | 398 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLQVSRLV LSSSSSSTRP KAAVSIPKLP KFHVSVPKIP TLSVKEPSFE FVESLPLSLK QKRGSDSIQR TRLNAVLEEV MDRIEMHKNI GDQRNNWNSL 101: LLNSVNMITL TAALMAGIAS VNGHGVDSVT AVKIASTVLL TSATGFAALM SKIQPSQLAE EQRNATRLFK KLRVEIEMFL RENEEIEEED VKEVIKRVLS 201: LDKAYPLPLI GTMLEKFPEE FKPATWWPEN KEKNPKTSLA NGWSQELEAE MREVAHVVKS RDAEEYEKLG HVALKLNRFL AISGPVLTGV SAVSSVFIGQ 301: DSGLAGIVAM TCASLAAVVN TLEHGGQVGM VFEMYRNSAG FFSLLEETMK STEKRENGQV FETRVAVKLG RSLSELRDLA KRSNLSQVKA KEFASKLF |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)