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AT1G55230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.945
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Family of unknown function (DUF716)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF716) ; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55240.1); Has 423 Blast hits to 422 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITNEeggNOG:ENOG4111FW3EMBL:AC027034EMBL:AY630767
EMBL:AY924712EMBL:CP002684EnsemblPlants:AT1G55230EnsemblPlants:AT1G55230.1
entrez:841966GeneID:841966GO:GO:0016021Gramene:AT1G55230.1
hmmpanther:PTHR16007hmmpanther:PTHR16007:SF29HOGENOM:HOG000242848InterPro:IPR006904
KEGG:ath:AT1G55230OMA:ITIFVMSPANTHER:PTHR16007Pfam:PF04819
PhylomeDB:Q9C893PIR:B96594Proteomes:UP000006548RefSeq:NP_175919.1
TAIR:AT1G55230TMHMM:TMhelixUniGene:At.50799UniProt:Q9C893
Coordinates (TAIR10) chr1:+:20602895..20603797
Molecular Weight (calculated) 33766.10 Da
IEP (calculated) 7.48
GRAVY (calculated) 0.30
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTLVGHVAP GFAFFALGLW HLFNNIKLFC LNPNTFTSSP WFPTSKLRHL ELYIIMVCSS ISIASELFIG PKKHQPFDSD GTIPSNHLHN FEHSSISMSF
101: LVYAIFAVVL DQERRRSNIS HGLTMLVASS AFAQQLFLFH LHSADHMGIE GQYHKLLQLI IFVSFLTTLI GITLPKSFLV SFVRSSSITF QGVWFVVMGY
201: MLWTPSLIPK GCFLHEEEGH QVIKCSSDKA IHRAKSLVNI EFSWFFVGIT IFVMSLFLIL SGLYGENAEY SILVTKDKGE ESGEEKQDIE SLKKSKPSFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)