AT1G49510.1::SUBA5

AT1G49510.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plastid 1.000
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:31932409 (2020): plastid PMID:31615849 (2019): plastid plastid thylakoid PMID:30962257 (2019): plastid PMID:24872594 (2014): plastid plastid envelope plastid inner membrane PMID:22550958 (2012): plastid PMID:20061580 (2010): plastid plastid envelope	PMID:24833385 (2014): AT4G14455.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT3G13175.1:None: PMID:24833385 (2014): AT1G47640.1:None: PMID:24833385 (2014): AT1G27290.1:None: PMID:24833385 (2014): AT1G07860.1:None: PMID:24833385 (2014): AT4G25360.1:None: PMID:24833385 (2014): AT2G41705.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT4G30500.1:None: PMID:24833385 (2014): AT2G22425.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT1G65690.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT3G26280.1:None: PMID:24833385 (2014): AT3G12180.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT2G42070.1 plastid [5.93]
AT3G53850.1 extracellular [5.04]
AT5G59500.1 plastid [4.88]
AT4G13220.1 plastid [4.84]
AT4G38160.1 plastid [4.78]
AT5G63050.1 plastid [4.75]
AT3G13740.1 plastid [4.57]
AT1G74370.1 plasma membrane [4.55]
AT1G66740.1 nucleus [4.51]
AT1G43190.1 nucleus [4.43]

AT1G07860.1 endoplasmic reticulum
AT1G27290.1 endoplasmic reticulum
AT1G47640.1 endoplasmic reticulum
AT2G22425.1 endoplasmic reticulum
AT4G25360.1 endoplasmic reticulum
AT3G12180.1 endoplasmic reticulum
AT3G13175.1 endoplasmic reticulum
AT3G17000.1 endoplasmic reticulum
AT1G17280.1 golgi
AT4G37680.1 golgi
AT4G14455.1 golgi
AT3G66654.1 golgi
AT4G30500.1 endoplasmic reticulum, golgi
AT2G26180.1 nucleus
AT2G41705.1 plasma membrane
AT1G65690.1 plasma membrane
AT5G06320.1 plasma membrane
AT3G26280.1 endoplasmic reticulum, plasma membrane
AT5G49540.1 vacuole

Description (TAIR10)

protein_coding : embryo defective 1273

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

embryo defective 1273 (emb1273); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410IYKC	eggNOG:ENOG410YIS3	EMBL:AC007504	EMBL:AK227372
EMBL:BT005857	EMBL:CP002684	EnsemblPlants:AT1G49510	EnsemblPlants:AT1G49510.1
entrez:841375	GeneID:841375	GO:GO:0016021	Gramene:AT1G49510.1
hmmpanther:PTHR36000	hmmpanther:PTHR36000:SF2	HOGENOM:HOG000093086	KEGG:ath:AT1G49510
OMA:YPYWGRI	PhylomeDB:Q9XIB8	PIR:H96531	Proteomes:UP000006548
RefSeq:NP_175374.2	TAIR:AT1G49510	tair10-symbols:emb1273	TMHMM:TMhelix
UniGene:At.23203	UniGene:At.67121	UniProt:Q9XIB8

Coordinates (TAIR10)

chr1:+:18327026..18328147

Molecular Weight (calculated)

27383.60 Da

IEP (calculated)

10.27

GRAVY (calculated)

-0.01

Length

240 amino acids

Sequence (TAIR10)
(BLAST)

001: MAMSHLFLSS SPQSSLALRL HSTTQFTLSY SKNNKDCSFQ SANEAKVSKR SLLCRAIHME SGHSGEQPKK LNFDNLLRRT KHVWDNSPQP VKEFPWNRAF
101: GNFIQLVLDL AISVVKFLFV PILAVSSISE MSYCAHERKL ALVPFPLVIG MVVAGVLQET ALKISPRLKE AEVPWHLIAM MMFFTLIKLP GPYYPYWGRL
201: LVPHFANGVL LRALWSMFFW YKKTRNTSGN PLQNHSLETE