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AT1G12110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nitrate transporter 1.1
Curator
Summary (TAIR10)
Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium.
Computational
Description (TAIR10)
nitrate transporter 1.1 (NRT1.1); FUNCTIONS IN: transporter activity, nitrate transmembrane transporter activity; INVOLVED IN: response to water deprivation, nitrate transport, response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G26690.1); Has 6820 Blast hits to 6682 proteins in 1271 species: Archae - 0; Bacteria - 3284; Metazoa - 500; Fungi - 374; Plants - 2207; Viruses - 0; Other Eukaryotes - 455 (source: NCBI BLink).
Protein Annotations
BioGrid:23003eggNOG:COG3104eggNOG:KOG1237EMBL:AC002131
EMBL:AK317498EMBL:BT002016EMBL:BT008783EMBL:CP002684
EMBL:L10357EnsemblPlants:AT1G12110EnsemblPlants:AT1G12110.1entrez:837763
GeneID:837763Genevisible:Q05085GO:GO:0005886GO:GO:0006857
GO:GO:0009414GO:GO:0009635GO:GO:0009734GO:GO:0010167
GO:GO:0015112GO:GO:0015293GO:GO:0015706GO:GO:0016021
GO:GO:0042128Gramene:AT1G12110.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF78
HOGENOM:HOG000237400InParanoid:Q05085IntAct:Q05085InterPro:IPR000109
InterPro:IPR018456InterPro:IPR020846iPTMnet:Q05085KEGG:ath:AT1G12110
OMA:HGLRPLQPANTHER:PTHR11654PaxDb:Q05085PDB:4OH3
PDB:5A2NPDB:5A2OPDBsum:4OH3PDBsum:5A2N
PDBsum:5A2OPfam:PF00854Pfam:Q05085PhylomeDB:Q05085
PIR:A45772PRIDE:Q05085PRO:PR:Q05085PROSITE:PS01022
PROSITE:PS01023ProteinModelPortal:Q05085Proteomes:UP000006548RefSeq:NP_563899.1
scanprosite:PS01022scanprosite:PS01023SMR:Q05085STRING:3702.AT1G12110.1
SUPFAM:SSF103473TAIR:AT1G12110tair10-symbols:ATNRT1tair10-symbols:B-1
tair10-symbols:CHL1tair10-symbols:CHL1-1tair10-symbols:NRT1tair10-symbols:NRT1.1
TCDB:2.A.17.3.1TMHMM:TMhelixUniGene:At.19624UniProt:Q05085
Coordinates (TAIR10) chr1:+:4105341..4109290
Molecular Weight (calculated) 64925.60 Da
IEP (calculated) 8.57
GRAVY (calculated) 0.36
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLPETKSDD ILLDAWDFQG RPADRSKTGG WASAAMILCI EAVERLTTLG IGVNLVTYLT GTMHLGNATA ANTVTNFLGT SFMLCLLGGF IADTFLGRYL
101: TIAIFAAIQA TGVSILTLST IIPGLRPPRC NPTTSSHCEQ ASGIQLTVLY LALYLTALGT GGVKASVSGF GSDQFDETEP KERSKMTYFF NRFFFCINVG
201: SLLAVTVLVY VQDDVGRKWG YGICAFAIVL ALSVFLAGTN RYRFKKLIGS PMTQVAAVIV AAWRNRKLEL PADPSYLYDV DDIIAAEGSM KGKQKLPHTE
301: QFRSLDKAAI RDQEAGVTSN VFNKWTLSTL TDVEEVKQIV RMLPIWATCI LFWTVHAQLT TLSVAQSETL DRSIGSFEIP PASMAVFYVG GLLLTTAVYD
401: RVAIRLCKKL FNYPHGLRPL QRIGLGLFFG SMAMAVAALV ELKRLRTAHA HGPTVKTLPL GFYLLIPQYL IVGIGEALIY TGQLDFFLRE CPKGMKGMST
501: GLLLSTLALG FFFSSVLVTI VEKFTGKAHP WIADDLNKGR LYNFYWLVAV LVALNFLIFL VFSKWYVYKE KRLAEVGIEL DDEPSIPMGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)