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AT3G14390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pyridoxal-dependent decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT5G11880.1); Has 13020 Blast hits to 12980 proteins in 2586 species: Archae - 150; Bacteria - 7800; Metazoa - 435; Fungi - 194; Plants - 400; Viruses - 27; Other Eukaryotes - 4014 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14390-MONOMERBioCyc:MetaCyc:AT3G14390-MONOMERBRENDA:4.1.1.20EC:4.1.1.20eggNOG:COG0019eggNOG:KOG0622EMBL:AB022220
EMBL:AF227913EMBL:AY050823EMBL:AY088418EMBL:AY122998EMBL:CP002686EnsemblPlants:AT3G14390EnsemblPlants:AT3G14390.1
entrez:820660Gene3D:2.40.37.10Gene3D:3.20.20.10GeneID:820660Genevisible:Q949X7GO:GO:0008836GO:GO:0009089
GO:GO:0009570Gramene:AT3G14390.1gramene_pathway:4.1.1.20gramene_pathway:PWY-5097gramene_plant_reactome:1119273gramene_plant_reactome:1119419gramene_plant_reactome:6875418
gramene_plant_reactome:6877370HAMAP:MF_02120hmmpanther:PTHR11482hmmpanther:PTHR11482:SF5HOGENOM:HOG000045070InParanoid:Q949X7InterPro:IPR000183
InterPro:IPR002986InterPro:IPR009006InterPro:IPR022643InterPro:IPR022644InterPro:IPR022653InterPro:IPR022657InterPro:IPR029066
KEGG:00300+4.1.1.20KEGG:ath:AT3G14390KO:K01586OMA:MSDNPRVPaxDb:Q949X7Pfam:PF00278Pfam:PF02784
Pfam:Q949X7PhylomeDB:Q949X7PRIDE:Q949X7PRINTS:PR01179PRINTS:PR01181PRO:PR:Q949X7PROSITE:PS00878
PROSITE:PS00879ProteinModelPortal:Q949X7Proteomes:UP000006548Reactome:R-ATH-351143Reactome:R-ATH-351202RefSeq:NP_188056.1scanprosite:PS00878
scanprosite:PS00879SMR:Q949X7STRING:3702.AT3G14390.1SUPFAM:SSF50621SUPFAM:SSF51419TAIR:AT3G14390TIGRfam:TIGR01048
TIGRFAMs:TIGR01048UniGene:At.26560UniPathway:UPA00034UniProt:Q949X7
Coordinates (TAIR10) chr3:+:4806771..4808954
Molecular Weight (calculated) 53560.40 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.16
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAATQFLSQ PSSLNPHQLK NQTSQRSRSI PVLSLKSTLK PLKRLSVKAA VVSQNSSKTV TKFDHCFKKS SDGFLYCEGT KVEDIMESVE RRPFYLYSKP
101: QITRNLEAYK EALEGVSSVI GYAIKANNNL KILEHLRSLG CGAVLVSGNE LRLALRAGFD PTKCIFNGNG KSLEDLVLAA QEGVFVNVDS EFDLNNIVEA
201: SRISGKQVNV LLRINPDVDP QVHPYVATGN KNSKFGIRNE KLQWFLDQVK AHPKELKLVG AHCHLGSTIT KVDIFRDAAV LMIEYIDEIR RQGFEVSYLN
301: IGGGLGIDYY HAGAVLPTPM DLINTVRELV LSRDLNLIIE PGRSLIANTC CFVNHVTGVK TNGTKNFIVI DGSMAELIRP SLYDAYQHIE LVSPPPAEAE
401: VTKFDVVGPV CESADFLGKD RELPTPPQGA GLVVHDAGAY CMSMASTYNL KMRPPEYWVE EDGSITKIRH AETFDDHLRF FEGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)