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AT5G11880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal-dependent decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT3G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G11880-MONOMERBioCyc:MetaCyc:AT5G11880-MONOMERBioGrid:16339BRENDA:4.1.1.20
EC:4.1.1.20eggNOG:COG0019eggNOG:KOG0622EMBL:AJ249960
EMBL:AL163812EMBL:AY049266EMBL:AY142042EMBL:CP002688
EnsemblPlants:AT5G11880EnsemblPlants:AT5G11880.1entrez:831061Gene3D:2.40.37.10
Gene3D:3.20.20.10GeneID:831061Genevisible:Q94A94GO:GO:0005829
GO:GO:0008836GO:GO:0009089GO:GO:0009507GO:GO:0009570
Gramene:AT5G11880.1gramene_pathway:4.1.1.20gramene_pathway:PWY-5097gramene_plant_reactome:1119273
gramene_plant_reactome:1119419gramene_plant_reactome:6875418gramene_plant_reactome:6877370HAMAP:MF_02120
hmmpanther:PTHR11482hmmpanther:PTHR11482:SF5HOGENOM:HOG000045070InParanoid:Q94A94
InterPro:IPR000183InterPro:IPR002986InterPro:IPR009006InterPro:IPR022643
InterPro:IPR022644InterPro:IPR022653InterPro:IPR022657InterPro:IPR029066
KEGG:00300+4.1.1.20KEGG:ath:AT5G11880KO:K01586OMA:AFEPGKF
PaxDb:Q94A94Pfam:PF00278Pfam:PF02784Pfam:Q94A94
PhylomeDB:Q94A94PIR:T48547PRIDE:Q94A94PRINTS:PR01179
PRINTS:PR01181PRO:PR:Q94A94PROSITE:PS00878PROSITE:PS00879
ProteinModelPortal:Q94A94Proteomes:UP000006548Reactome:R-ATH-351143Reactome:R-ATH-351202
RefSeq:NP_568252.1scanprosite:PS00878scanprosite:PS00879SMR:Q94A94
STRING:3702.AT5G11880.1SUPFAM:SSF50621SUPFAM:SSF51419TAIR:AT5G11880
TIGRfam:TIGR01048TIGRFAMs:TIGR01048UniGene:At.5093UniPathway:UPA00034
UniProt:Q94A94
Coordinates (TAIR10) chr5:-:3827806..3829942
Molecular Weight (calculated) 54167.10 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.14
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVTQFLSQ PSSIRGTLNQ YQLNQTSLSR IPFLSLKSTL KPLKRLSVKA AVSQNSTKTL TKESASSFDH CFKKSSDGFL YCEGTKVQDI METVEKRPFY
101: LYSKPQITRN LEAYKEALEG VRSVIGYAIK ANNNLKILEH LRSLGCGAVL VSGNELRLAL LAGFDPTKCI FNGNGKSLED LVLAAQEGVF VNVDSEFDLN
201: NIVEASRISG KQVNVLLRIN PDVDPQVHPY VATGNKNSKF GIRNEKLQWF LDEVKAHPKE LKLVGAHCHL GSTITKVDIF RDAAVLMIEY IDEIRRQGFE
301: VSYLNIGGGL GIDYYHAGAV LPTPMDLINT VRELVLSRDL NLIIEPGRSL IANTCCFVNH VTGVKTNGTK NFIVIDGSMA ELIRPSLYDA YQHIELVSPT
401: PPEAEVTKFD VVGPVCESAD FLGKDRELPT PPQGAGLVVH DAGAYCMSMA STYNLKMRPP EYWVEEDGSI TKIRHAETFD DHLRFFEGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)