suba logo
AT2G29410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.545
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : metal tolerance protein B1
Curator
Summary (TAIR10)
member of Zinc transporter (ZAT) family
Computational
Description (TAIR10)
metal tolerance protein B1 (MTPB1); FUNCTIONS IN: efflux transmembrane transporter activity, zinc ion transmembrane transporter activity, inorganic anion transmembrane transporter activity; INVOLVED IN: zinc ion transport, cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: zinc transporter of Arabidopsis thaliana (TAIR:AT2G46800.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:2840eggNOG:COG1230eggNOG:KOG1482EMBL:AC004561EMBL:BT014994EMBL:BT015899EMBL:CP002685
EnsemblPlants:AT2G29410EnsemblPlants:AT2G29410.1entrez:817490Gene3D:1.20.1510.10GeneID:817490Genevisible:Q6DBM8GO:GO:0005385
GO:GO:0005773GO:GO:0005774GO:GO:0010043GO:GO:0016020GO:GO:0016021GO:GO:0046872GO:GO:0061088
GO:GO:0071577Gramene:AT2G29410.1hmmpanther:PTHR11562hmmpanther:PTHR11562:SF54HOGENOM:HOG000079023InParanoid:Q6DBM8InterPro:IPR002524
InterPro:IPR027469KEGG:ath:AT2G29410KO:K14689OMA:GRSYGWLPANTHER:PTHR11562PaxDb:Q6DBM8Pfam:PF01545
Pfam:Q6DBM8PhylomeDB:Q6DBM8PIR:A84696PRIDE:Q6DBM8PRO:PR:Q6DBM8ProteinModelPortal:Q6DBM8Proteomes:UP000006548
Reactome:R-ATH-264876Reactome:R-ATH-435368RefSeq:NP_180502.2SMR:Q6DBM8STRING:3702.AT2G29410.1SUPFAM:0054606SUPFAM:SSF160240
TAIR:AT2G29410tair10-symbols:ATMTPB1tair10-symbols:MTPB1TIGRfam:TIGR01297TIGRFAMs:TIGR01297TMHMM:TMhelixUniGene:At.20452
UniGene:At.49552UniProt:Q6DBM8
Coordinates (TAIR10) chr2:+:12616810..12617937
Molecular Weight (calculated) 42342.60 Da
IEP (calculated) 6.61
GRAVY (calculated) 0.03
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MELEQICILK PDDEEEMESP SPSKTEENLG VVPLSCAFTR QEHCVSETKE REESTRRLSS LIFLYLIVMS VQIVGGFKAN SLAVMTDAAH LLSDVAGLCV
101: SLLAIKVSSW EANPRNSFGF KRLEVLAAFL SVQLIWLVSG VIIHEAIQRL LSRSREVNGE IMFGISAFGF FMNLVMVLWL GHNHSHHHHD HHHHHHNHKH
201: QHQHHHKEVV AEEEEEEMNP LKGEKSSSKE MNINIQGAYL HAMADMIQSL GVMIGGGIIW VKPKWVLVDL ICTLVFSAFA LAATLPILKN IFGILMERVP
301: RDMDIEKLER GLKRIDGVKI VYDLHVWEIT VGRIVLSCHI LPEPGASPKE IITGVRNFCR KSYGIYHATV QVESE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)