AT5G44030.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cellulose synthase A4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase A4 (CESA4); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, defense response to bacterium, defense response to fungus, secondary cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 3263 Blast hits to 2832 proteins in 640 species: Archae - 9; Bacteria - 1071; Metazoa - 1; Fungi - 31; Plants - 2051; Viruses - 7; Other Eukaryotes - 93 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:17714713..17719564 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119606.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.98 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1049 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEPNTMASFD DEHRHSSFSA KICKVCGDEV KDDDNGQTFV ACHVCVYPVC KPCYEYERSN GNKCCPQCNT LYKRHKGSPK IAGDEENNGP DDSDDELNIK 0101: YRQDGSSIHQ NFAYGSENGD YNSKQQWRPN GRAFSSTGSV LGKDFEAERD GYTDAEWKER VDKWKARQEK RGLVTKGEQT NEDKEDDEEE YLDAEARQPL 0201: WRKVPISSSK ISPYRIVIVL RLVILVFFFR FRILTPAKDA YPLWLISVIC EIWFALSWIL DQFPKWFPIN RETYLDRLSM RFERDGEKNK LAPVDVFVST 0301: VDPLKEPPII TANTILSILA VDYPVNKVSC YVSDDGASML LFDTLSETSE FARRWVPFCK KYNVEPRAPE FYFSEKIDYL KDKVQTTFVK DRRAMKREYE 0401: EFKVRINALV AKAQKKPEEG WVMQDGTPWP GNNTRDHPGM IQVYLGKEGA FDIDGNELPR LVYVSREKRP GYAHHKKAGA MNAMVRVSAV LTNAPFMLNL 0501: DCDHYINNSK AIRESMCFLM DPQLGKKLCY VQFPQRFDGI DLNDRYANRN IVFFDINMRG LDGIQGPVYV GTGCVFNRPA LYGYEPPVSE KRKKMTCDCW 0601: PSWICCCCGG GNRNHKSDSS KKKSGIKSLF SKLKKKTKKK SDDKTMSSYS RKRSSTEAIF DLEDIEEGLE GYDELEKSSL MSQKNFEKRF GMSPVFIAST 0701: LMENGGLPEA TNTSSLIKEA IHVISCGYEE KTEWGKEIGW IYGSVTEDIL TGFRMHCRGW KSVYCMPKRP AFKGSAPINL SDRLHQVLRW ALGSVEIFFS 0801: RHCPLWYAWG GKLKILERLA YINTIVYPFT SIPLLAYCTI PAVCLLTGKF IIPTINNFAS IWFLALFLSI IATAILELRW SGVSINDLWR NEQFWVIGGV 0901: SAHLFAVFQG LLKVLFGVDT NFTVTSKGAS DEADEFGDLY LFKWTTLLIP PTTLIILNMV GVVAGVSDAI NNGYGSWGPL FGKLFFAFWV IVHLYPFLKG 1001: LMGRQNRTPT IVVLWSILLA SIFSLVWVRI DPFLPKQTGP LLKQCGVDC |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)