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AT5G20730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator
Summary (TAIR10)
Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
Computational
Description (TAIR10)
NON-PHOTOTROPHIC HYPOCOTYL (NPH4); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 127290 Blast hits to 55954 proteins in 2093 species: Archae - 44; Bacteria - 12651; Metazoa - 44969; Fungi - 11875; Plants - 9571; Viruses - 386; Other Eukaryotes - 47794 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHYAeggNOG:ENOG410YDITEMBL:GU348473EMBL:HM487454EMBL:HM487456EMBL:HM487457EMBL:HM487459
EMBL:HM487460EMBL:HM487462EMBL:HM487465EnsemblPlants:AT5G20730EnsemblPlants:AT5G20730.1entrez:832196ExpressionAtlas:D3K053
ExpressionAtlas:D3K054ExpressionAtlas:E1A6M5ExpressionAtlas:E1A6N0hmmpanther:PTHR31384hmmpanther:PTHR31384:SF21ncoils:CoilPaxDb:E1A6M5
Pfam:PF02309Pfam:PF02362Pfam:PF06507Pfscan:PS50863Pfscan:PS51745STRING:3702.AT5G20730.1SUPFAM:SSF54277
tair10-symbols:ARF7tair10-symbols:BIPtair10-symbols:IAA21tair10-symbols:MSG1tair10-symbols:NPH4tair10-symbols:TIR5UniProt:D3K053
UniProt:D3K054UniProt:D3K055UniProt:D3K056UniProt:E1A6M5UniProt:E1A6N0
Coordinates (TAIR10) chr5:-:7016704..7021504
Molecular Weight (calculated) 129080.00 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.69
Length 1165 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR WAAPAEFVVP LAKYTKAMYA QVSLGMRFRM
0301: IFETEECGVR RYMGTVTGIS DLDPVRWKNS QWRNLQIGWD ESAAGDRPSR VSVWDIEPVL TPFYICPPPF FRPRFSGQPG MPDDETDMES ALKRAMPWLD
0401: NSLEMKDPSS TIFPGLSLVQ WMNMQQQNGQ LPSAAAQPGF FPSMLSPTAA LHNNLGGTDD PSKLLSFQTP HGGISSSNLQ FNKQNQQAPM SQLPQPPTTL
0501: SQQQQLQQLL HSSLNHQQQQ SQSQQQQQQQ QLLQQQQQLQ SQQHSNNNQS QSQQQQQLLQ QQQQQQLQQQ HQQPLQQQTQ QQQLRTQPLQ SHSHPQPQQL
0601: QQHKLQQLQV PQNQLYNGQQ AAQQHQSQQA STHHLQPQLV SGSMASSVIT PPSSSLNQSF QQQQQQSKQL QQAHHHLGAS TSQSSVIETS KSSSNLMSAP
0701: PQETQFSRQV EQQQPPGLNG QNQQTLLQQK AHQAQAQQIF QQSLLEQPHI QFQLLQRLQQ QQQQQFLSPQ SQLPHHQLQS QQLQQLPTLS QGHQFPSSCT
0801: NNGLSTLQPP QMLVSRPQEK QNPPVGGGVK AYSGITDGGD APSSSTSPST NNCQISSSGF LNRSQSGPAI LIPDAAIDMS GNLVQDLYSK SDMRLKQELV
0901: GQQKSKASLT DHQLEASASG TSYGLDGGEN NRQQNFLAPT FGLDGDSRNS LLGGANVDNG FVPDTLLSRG YDSQKDLQNM LSNYGGVTND IGTEMSTSAV
1001: RTQSFGVPNV PAISNDLAVN DAGVLGGGLW PAQTQRMRTY TKVQKRGSVG RSIDVNRYRG YDELRHDLAR MFGIEGQLED PQTSDWKLVY VDHENDILLV
1101: GDDPWEEFVN CVQSIKILSS AEVQQMSLDG NFAGVPVTNQ ACSGGDSGNA WRGHYDDNSA TSFNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)