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AT3G13410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFZ9eggNOG:ENOG4111VCBEMBL:AY035027EMBL:AY059100EMBL:BT000749EMBL:BT006188EMBL:CP002686
EnsemblPlants:AT3G13410EnsemblPlants:AT3G13410.1entrez:820541GeneID:820541GO:GO:0005783GO:GO:0016021Gramene:AT3G13410.1
hmmpanther:PTHR35285KEGG:ath:AT3G13410OMA:SEIMSEVPhylomeDB:Q93WB8Proteomes:UP000006548RefSeq:NP_566456.3STRING:3702.AT3G13410.1
SwissPalm:Q93WB8TAIR:AT3G13410TMHMM:TMhelixUniGene:At.23723UniProt:Q93WB8
Coordinates (TAIR10) chr3:-:4362149..4364032
Molecular Weight (calculated) 34990.50 Da
IEP (calculated) 4.36
GRAVY (calculated) 0.01
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKIQIGAVA LLVFLSVASL FEIGLASPNT VPAFLWSPHL QSANGELDEA VNYQVMSAKD LVGSVFTQGG WSNFLCSEKK LEQPVDVALV FIGRELLSSD
101: VSSKRNSDPA LVNTLNNLFT ASNFSLAFPY IAAPEEERME NLLLSGLKEA CPNNVGVSNI VFSDSCFVED GTIQKLSDLQ SFKDHLLARR ETRKEGETDL
201: VVLCSEGSES NSQAGQSHSE RESFLELVSS VEQSGSKYTA LYVSDPYWYT SYKTLQRFLA ETAKGNSTPE IATGCDELCK FKSSLLEGIL VGIVFLLILI
301: SGLCCMAGID TPTRFETPQD S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)