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AT1G61870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pentatricopeptide repeat 336
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide repeat 336 (PPR336); LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G11630.1); Has 31000 Blast hits to 9550 proteins in 270 species: Archae - 4; Bacteria - 23; Metazoa - 297; Fungi - 351; Plants - 29494; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).
Protein Annotations
BioGrid:27707eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004392
EMBL:AF428391EMBL:AY062858EMBL:AY085627EMBL:BT009692
EMBL:CP002684EnsemblPlants:AT1G61870EnsemblPlants:AT1G61870.1entrez:842484
Gene3D:1.25.40.10GeneID:842484Genevisible:Q8LE47GO:GO:0000166
GO:GO:0003723GO:GO:0005739GO:GO:0005743GO:GO:0016020
Gramene:AT1G61870.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF579HOGENOM:HOG000238350
InParanoid:Q8LE47IntAct:Q8LE47InterPro:IPR002885InterPro:IPR011990
iPTMnet:Q8LE47KEGG:ath:AT1G61870OMA:FYSVFDEPaxDb:Q8LE47
Pfam:PF01535Pfam:PF13041Pfam:Q8LE47Pfscan:PS51375
PhylomeDB:Q8LE47PIR:T02133PRIDE:Q8LE47PRO:PR:Q8LE47
PROSITE:PS51375ProteinModelPortal:Q8LE47Proteomes:UP000006548RefSeq:NP_564786.1
SMR:Q8LE47STRING:3702.AT1G61870.1SUPFAM:SSF48452TAIR:AT1G61870
tair10-symbols:PPR336TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.23099
UniProt:Q8LE47
Coordinates (TAIR10) chr1:-:22865326..22866552
Molecular Weight (calculated) 45760.40 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.26
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)