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AT1G19850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
Curator
Summary (TAIR10)
Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.
Computational
Description (TAIR10)
MONOPTEROS (MP); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, promoter binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 19 (TAIR:AT1G19220.1); Has 2568 Blast hits to 2208 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 4; Fungi - 3; Plants - 2536; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:23812eggNOG:ENOG410IH2QeggNOG:ENOG410Y913EMBL:AB199792EMBL:AC007797EMBL:AF037228EMBL:AF037229
EMBL:AF334716EMBL:BT002050EMBL:BT008805EMBL:CP002684EMBL:EF598523EMBL:EF598524EMBL:EF598525
EMBL:EF598526EMBL:EF598527EMBL:EF598528EMBL:EF598529EMBL:EF598530EMBL:EF598531EMBL:EF598532
EMBL:EF598533EMBL:EF598534EMBL:EF598535EMBL:EF598536EMBL:EF598537EMBL:EF598538EMBL:EF598539
EMBL:EF598540EMBL:EF598541EMBL:EF598542EMBL:EF598543EMBL:EF598544EMBL:EF598545EMBL:EF598546
EMBL:U79557EnsemblPlants:AT1G19850EnsemblPlants:AT1G19850.1entrez:838573Gene3D:2.40.330.10GeneID:838573Genevisible:P93024
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009733GO:GO:0009734GO:GO:0009793
GO:GO:0009908GO:GO:0009942GO:GO:0010051GO:GO:0010305GO:GO:0016020GO:GO:0042802GO:GO:0044212
GO:GO:0048364GO:GO:0048507Gramene:AT1G19850.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF10InParanoid:P93024IntAct:P93024
InterPro:IPR000270InterPro:IPR003340InterPro:IPR010525InterPro:IPR015300InterPro:IPR033389KEGG:ath:AT1G19850KO:K14486
ncoils:CoilOMA:LMKMMMRPaxDb:P93024PDB:4CHKPDB:4LDUPDBsum:4CHKPDBsum:4LDU
Pfam:P93024Pfam:PF02309Pfam:PF02362Pfam:PF06507Pfscan:PS50863Pfscan:PS51745PhylomeDB:P93024
PIR:G86331PIR:T51807PRIDE:P93024PRO:PR:P93024PROSITE:PS50863PROSITE:PS51745ProteinModelPortal:P93024
Proteomes:UP000006548RefSeq:NP_173414.1SMART:SM01019SMR:P93024STRING:3702.AT1G19850.1SUPFAM:SSF101936SUPFAM:SSF54277
TAIR:AT1G19850tair10-symbols:ARF5tair10-symbols:IAA24tair10-symbols:MPUniGene:At.10494UniGene:At.41731UniProt:P93024
Coordinates (TAIR10) chr1:+:6887353..6891182
Molecular Weight (calculated) 99655.80 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.40
Length 902 amino acids
Sequence (TAIR10)
(BLAST)
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)