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AT5G13440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12606038 (2003): mitochondrion
  • PMID:11870776 (2002): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquinol-cytochrome C reductase iron-sulfur subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquinol-cytochrome C reductase iron-sulfur subunit; FUNCTIONS IN: metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome c reductase, iron-sulphur subunit (InterPro:IPR006317), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske iron-sulphur protein, C-terminal (InterPro:IPR005805), Rieske iron-sulphur protein (InterPro:IPR014349), Ubiquinol cytochrome reductase, transmembrane domain (InterPro:IPR004192); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase iron-sulfur subunit (TAIR:AT5G13430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13440-MONOMEREC:1.10.2.2eggNOG:COG0723eggNOG:KOG1671
EMBL:AF370533EMBL:AL163572EMBL:AY081510EMBL:CP002688
EnsemblPlants:AT5G13440EnsemblPlants:AT5G13440.1entrez:831185Gene3D:1.20.5.270
Gene3D:2.102.10.10GeneID:831185GO:GO:0005739GO:GO:0005750
GO:GO:0008121GO:GO:0046872GO:GO:0051537Gramene:AT5G13440.1
hmmpanther:PTHR10134hmmpanther:PTHR10134:SF1IntAct:Q9LYR2InterPro:IPR004192
InterPro:IPR005805InterPro:IPR006317InterPro:IPR014349InterPro:IPR017941
KEGG:00190+1.10.2.2KEGG:ath:AT5G13440KO:K00411MINT:MINT-4330379
OMA:QVITQGNPANTHER:PTHR10134Pfam:PF00355Pfam:PF02921
Pfscan:PS51296PhylomeDB:Q9LYR2PIR:T48591PRINTS:PR00162
PROSITE:PS51296Proteomes:UP000006548RefSeq:NP_196848.1SMR:Q9LYR2
STRING:3702.AT5G13440.1SUPFAM:SSF50022SUPFAM:SSF81502TAIR:AT5G13440
TIGRfam:TIGR01416TIGRFAMs:TIGR01416UniGene:At.25289UniGene:At.28659
UniProt:Q9LYR2
Coordinates (TAIR10) chr5:-:4308431..4310022
Molecular Weight (calculated) 29903.50 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.16
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRVAGRRLF SVSQRSSTAT SFVLSRDHTL SDGGNSSSAS RSVPSADLSS FNSYHRSVIR GFASQVITQG NEIGFGSEVP ATVEAVKTPN SKIVYDDHNH
101: ERYPPGDPSK RAFAYFVLSG GRFVYASVLR LLVLKLIVSM SASKDVLALA SLEVDLGSIE PGTTVTVKWR GKPVFIRRRT EDDIKLANSV DVGSLRDPQE
201: DSVRVKNPEW LIVVGVCTHL GCIPLPNAGD YGGWFCPCHG SHYDISGRIR KGPAPYNLEV PTYSFLEENK LLIG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)