suba logo
AT4G27435.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.594
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT3G15480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX0HeggNOG:ENOG4111SY7EMBL:AF458340EMBL:AY054257
EMBL:CP002687EnsemblPlants:AT4G27435EnsemblPlants:AT4G27435.1entrez:828852
GeneID:828852GO:GO:0016021Gramene:AT4G27435.1hmmpanther:PTHR31769
hmmpanther:PTHR31769:SF7HOGENOM:HOG000241124InterPro:IPR009606KEGG:ath:AT4G27435
OMA:ICWVAFFPfam:PF06749PhylomeDB:Q940M6Proteomes:UP000006548
RefSeq:NP_567774.1STRING:3702.AT4G27435.1TAIR:AT4G27435TMHMM:TMhelix
UniGene:At.26388UniProt:Q940M6
Coordinates (TAIR10) chr4:+:13723903..13724872
Molecular Weight (calculated) 19183.40 Da
IEP (calculated) 8.34
GRAVY (calculated) 0.61
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKIVSAIV FVFNLIAFGL AVAAEQRRST ARVVQDTEVQ YNYCVYDSDR ATGYGVGAFL FSVASQILIM LVSRCFCCGK PLKPGGSRAL ALILFIVSWM
101: FFLIAEICLL AGSVENAYHT KYRTMFMDNP PDCQTLRKGV FAAGASFVFF NAIVSQFYYF FYFSAAEASL SPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)