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AT4G24310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.935
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF679)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF679); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT3G02430.1); Has 267 Blast hits to 259 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW2BeggNOG:ENOG410Y7DVEMBL:AK228084EMBL:AL078637
EMBL:AL161561EMBL:BT004778EMBL:CP002687EnsemblPlants:AT4G24310
EnsemblPlants:AT4G24310.1entrez:828534GeneID:828534GO:GO:0005783
GO:GO:0016021Gramene:AT4G24310.1hmmpanther:PTHR31621hmmpanther:PTHR31621:SF10
HOGENOM:HOG000237886IntAct:Q9STW3InterPro:IPR007770KEGG:ath:AT4G24310
OMA:NHGACDAPfam:PF05078PhylomeDB:Q9STW3PIR:T09894
Proteomes:UP000006548RefSeq:NP_194162.1STRING:3702.AT4G24310.1TAIR:AT4G24310
TMHMM:TMhelixUniGene:At.32358UniProt:Q9STW3
Coordinates (TAIR10) chr4:+:12600900..12601541
Molecular Weight (calculated) 23208.10 Da
IEP (calculated) 8.31
GRAVY (calculated) 0.15
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPSSLTQR NPTSSQEQSE SVPQLRRQTS QHAVMSQTLT SAANLANLLP TGTLLAFTLL IPVFTSNGSC DYPTQVLTIV LLTLLSISCF LSSFTDSVKA
101: EDGNVYYGFA TRKGMWVFDY PDPDGLGLPN LSKYRIRIID WIHAVLSVLV FGAVALRDKN AVSCFYPAPE QETKKVLDIV PMGVGVICGM LFLVFPARRH
201: GIGYPVTGDG GRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)